Evidence map›Paper›PMID 39152248›Full record

ArticleScientific reports2024

Multiple omics integrative analysis identifies GARS1 as a novel prognostic and immunological biomarker: from pan-cancer to bladder cancer.

Weihui Liu, Chengcheng Wei, Qingliu He, Zhaohui Chen, Wei Zhuang, Yihong Guo, Xueyi Xue

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Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Weihui Liu *Department of Urology, The First Affiliated Hospital of Fujian Medical University, Fuzhou, 350005, China.
Chengcheng Wei *Department of Urology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430074, China.
Qingliu HeDepartment of Urology, The Second Affiliated Hospital of Fujian Medical University, Quanzhou, 362000, China.
Zhaohui ChenDepartment of Urology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430074, China.
Wei ZhuangDepartment of Urology, The Second Affiliated Hospital of Fujian Medical University, Quanzhou, 362000, China.
Yihong GuoDepartment of Urology, The Second Affiliated Hospital of Fujian Medical University, Quanzhou, 362000, China. hotniu@fmu.edu.cn.
Xueyi XueDepartment of Urology, Urology Research Institute, The First Affiliated Hospital of Fujian Medical University, Fuzhou, 350005, China. cmd15205014314@163.com.

Funding

Natural Science Foundation of Fujian Province No. 2021J01266Natural Science Foundation of Fujian Province No. 2021J01276Natural Science Foundation of Fujian Province No. 2022J01273Quanzhou City Science and Technology Program of China No. 2023C008YR
6 · The paper itself

Abstract

Glycyl-tRNA synthetase (GARS1) is differentially expressed across cancers. In this study, the value of GARS1 in the diagnosis and prognosis of various cancers was comprehensively evaluated by multiple omics integrative pan-cancer analysis and experimental verification. Through Kaplan-Meier, ROC and multiple databases, we explored GARS1 expression and prognostic and diagnostic patterns across cancers. The GARS1 relative reaction network was identified in PPI, GO, KEGG, methylation models and the genetic mutation atlas. Further research on the GARS1 value in bladder urothelial carcinoma (BLCA) was conducted by regression and nomogram models. We further analyzed the correlation between GARS1 and immune markers and cells in BLCA. Finally, in vitro experiments were used to validate GARS1 the oncogenic function of GARS1 in BLCA. We found that GARS1 was highly expressed across cancers, especially in BLCA. GARS1 expression was correlated with poor survival and had high diagnostic value in most tumor types. GARS1 is significantly associated with tRNA-related pathways whose mutation sites are mainly located on tRNA synthetase. In addition, Upregulation of GARS1 was connected with immune cell infiltration and five key MMR genes. M2 macrophages, TAMs, Th1 and T-cell exhaustion, and marker sets associated with GARS1 expression indicated specific immune infiltration in BLCA. Finally, in vitro experiments validated that GARS1 expression promotes BLCA cell proliferation and metastasis and inhibits apoptosis. Overall, GARS1 can be a novel prognostic and immunological biomarker through multiple omics integrative pan-cancer analysis. The expression of GARS1 in BLCA was positively correlated with specific immune infiltration, indicating that GARS1 might be related to the tumor immune microenvironment.

Indexed as

Biomarkers, TumorGene Expression Regulation, NeoplasticUrinary Bladder NeoplasmsCell Line, TumorCell ProliferationGlycine-tRNA LigaseHumansPrognosisTumor MicroenvironmentBiomarkers, TumorGARS1 protein, humanGlycine-tRNA LigaseBladder cancerGARS1Immune infiltrationMultiple omicsPan-cancer

Identifiers

PMID39152248
PMCPMC11329754

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.