Evidence map›Paper›PMID 39152217›Full record

ArticleEMBO reports2024

WIPI2b recruitment to phagophores and ATG16L1 binding are regulated by ULK1 phosphorylation.

Andrea Gubas, Eleanor Attridge, Harold Bj Jefferies, Taki Nishimura, Minoo Razi, Simone Kunzelmann, Yuval Gilad, Thomas J Mercer, Michael M Wilson, Adi Kimchi and 1 more

Abstract read
In one paragraph

Article in EMBO reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The Human Autophagy Core Complexes.Annual review of biochemistry · 2026
    Review
  8. ER membrane receptors engage core autophagy machinery to initiate ER-phagy.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Andrea Gubas *Molecular Cell Biology of Autophagy, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.ORCID 0000-0003-4015-0460
Eleanor Attridge *Molecular Cell Biology of Autophagy, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.ORCID 0009-0004-5799-2159
Harold Bj JefferiesMolecular Cell Biology of Autophagy, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.
Taki NishimuraDepartment of Biochemistry and Molecular Biology, Graduate School and Faculty of Medicine, The University of Tokyo, Tokyo, Japan.
Minoo RaziMolecular Cell Biology of Autophagy, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.
Simone KunzelmannStructural Biology Science Technology Platform, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.ORCID 0000-0002-2678-0549
Yuval GiladThe Weizmann Institute of Science, Rehovot, Israel.
Thomas J MercerGenetech, 1 DNA Way, South San Francisco, CA, 94080, USA.
Michael M WilsonThe Babraham Institute, Cambridge, CB22 3AT, UK.
Adi KimchiThe Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0002-8236-8989
Sharon A ToozeMolecular Cell Biology of Autophagy, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK. Sharon.tooze@crick.ac.uk.ORCID 0000-0002-2182-3116

Funding

Cancer Research UK (CRUK) CC1068UKRI | Medical Research Council (MRC) CC1068Wellcome Trust CC2134Wellcome Trust (WT) CC1068
6 · The paper itself

Abstract

One of the key events in autophagy is the formation of a double-membrane phagophore, and many regulatory mechanisms underpinning this remain under investigation. WIPI2b is among the first proteins to be recruited to the phagophore and is essential for stimulating autophagy flux by recruiting the ATG12-ATG5-ATG16L1 complex, driving LC3 and GABARAP lipidation. Here, we set out to investigate how WIPI2b function is regulated by phosphorylation. We studied two phosphorylation sites on WIPI2b, S68 and S284. Phosphorylation at these sites plays distinct roles, regulating WIPI2b's association with ATG16L1 and the phagophore, respectively. We confirm WIPI2b is a novel ULK1 substrate, validated by the detection of endogenous phosphorylation at S284. Notably, S284 is situated within an 18-amino acid stretch, which, when in contact with liposomes, forms an amphipathic helix. Phosphorylation at S284 disrupts the formation of the amphipathic helix, hindering the association of WIPI2b with membranes and autophagosome formation. Understanding these intricacies in the regulatory mechanisms governing WIPI2b's association with its interacting partners and membranes, holds the potential to shed light on these complex processes, integral to phagophore biogenesis.

Indexed as

AutophagyAutophagy-Related Protein-1 HomologAutophagy-Related ProteinsMembrane ProteinsAutophagosomesCarrier ProteinsHEK293 CellsHumansIntracellular Signaling Peptides and ProteinsMicrotubule-Associated ProteinsPhosphate-Binding ProteinsPhosphorylationProtein BindingATG16L1 protein, humanAutophagy-Related Protein-1 HomologAutophagy-Related ProteinsCarrier ProteinsIntracellular Signaling Peptides and ProteinsMembrane ProteinsMicrotubule-Associated ProteinsPhosphate-Binding ProteinsULK1 protein, humanWIPI2 protein, humanAmphipathic HelixAutophagosomeAutophagyKinaseWIPIs

Identifiers

PMID39152217
PMCPMC11387628

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.