Evidence map›Paper›PMID 39152123›Full record

ArticleNature communications2024

Cell-to-cell interactions revealed by cryo-tomography of a DPANN co-culture system.

Matthew D Johnson, Doulin C Shepherd, Hiroyuki D Sakai, Manasi Mudaliyar, Arun Prasad Pandurangan, Francesca L Short, Paul D Veith, Nichollas E Scott, Norio Kurosawa, Debnath Ghosal

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Matthew D Johnson *Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, Australia.ORCID 0000-0002-0808-3336
Doulin C Shepherd *Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, Australia.ORCID 0000-0003-3190-9447
Hiroyuki D SakaiDepartment of Science and Engineering for Sustainable Innovation, Faculty of Science and Engineering, Soka University, Hachioji, Tokyo, 192-8577, Japan.ORCID 0000-0003-3583-0285
Manasi MudaliyarDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, Australia.
Arun Prasad PanduranganHeart and Lung Research Institute, Department of Medicine, University of Cambridge, Cambridge, UK.ORCID 0000-0001-7168-7143
Francesca L ShortDepartment of Microbiology and Infection Program, Biomedicine Discovery Institute, Monash University, 19 Innovation Walk, Clayton, VIC, 3800, Australia.ORCID 0000-0002-0025-4858
Paul D VeithOral Health Cooperative Research Centre, Melbourne Dental School, Bio21 Institute, The University of Melbourne, Parkville, VIC, Australia.
Nichollas E ScottDepartment of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia.ORCID 0000-0003-2556-8316
Norio KurosawaDepartment of Science and Engineering for Sustainable Innovation, Faculty of Science and Engineering, Soka University, Hachioji, Tokyo, 192-8577, Japan.ORCID 0000-0001-5095-2104
Debnath GhosalDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, Australia. debnath.ghosal@unimelb.edu.au.ORCID 0000-0002-2227-0330

Funding

Department of Education and Training | Australian Research Council (ARC) DP210100362Department of Education and Training | Australian Research Council (ARC) FT200100270Department of Health | National Health and Medical Research Council (NHMRC) APP1196924Human Frontier Science Program (HFSP) RGEC33/2023Japan Society for the Promotion of Science London (JSPS London) 21K15153
6 · The paper itself

Abstract

DPANN is a widespread and diverse group of archaea characterized by their small size, reduced genome, limited metabolic pathways, and symbiotic existence. Known DPANN species are predominantly obligate ectosymbionts that depend on their host for proliferation. The structural and molecular details of host recognition, host-DPANN intercellular communication, and host adaptation in response to DPANN attachment remain unknown. Here, we use electron cryotomography (cryo-ET) to show that the Microcaldus variisymbioticus ARM-1 may interact with its host, Metallosphaera javensis AS-7 through intercellular proteinaceous nanotubes. Combining cryo-ET and sub-tomogram averaging, we show the in situ architectures of host and DPANN S-layers and the structures of the nanotubes in their primed and extended states. In addition, comparative proteomics and genomic analyses identified host proteomic changes in response to DPANN attachment. These results provide insights into the structural basis of host-DPANN communication and deepen our understanding of the host ectosymbiotic relationships.

Indexed as

Cryoelectron MicroscopyElectron Microscope TomographySymbiosisArchaeaArchaeal ProteinsCell CommunicationCoculture TechniquesNanotubesProteomicsArchaeal Proteins

Identifiers

PMID39152123
PMCPMC11329633

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.