Evidence map›Paper›PMID 39152082›Full record

ReviewTrends in molecular medicine2024

Exploring new frontiers in type 1 diabetes through advanced mass-spectrometry-based molecular measurements.

Soumyadeep Sarkar, Xueyun Zheng, Geremy C Clair, Yu Mi Kwon, Youngki You, Adam C Swensen, Bobbie-Jo M Webb-Robertson, Ernesto S Nakayasu, Wei-Jun Qian, Thomas O Metz

Abstract readReview
In one paragraph

Review in Trends in molecular medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Soumyadeep SarkarBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA.
Xueyun ZhengBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA.
Geremy C ClairBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA.
Yu Mi KwonEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, 99352, USA.
Youngki YouBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA.
Adam C SwensenBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA.
Bobbie-Jo M Webb-RobertsonBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA.
Ernesto S NakayasuBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA. Electronic address: ernesto.nakayasu@pnnl.gov.
Wei-Jun QianBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA. Electronic address: weijun.qian@pnnl.gov.
Thomas O MetzBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA. Electronic address: thomas.metz@pnnl.gov.

Funding

Renewal of the Human Islet Research Enhancement Center (HIREC) for the Type-1-Diabetes-Focused Human Islet Research Network (HIRN).U24DK104162 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI John S. Kaddis, Joyce Carol Niland · 2019 to 2026
$12.3M
The Integrated Stress Response in Human Islets During Early T1DU01DK127786 · NIDDK · UNIVERSITY OF CHICAGO · PI EVANS-MOLINA, CARMELLA, MIRMIRA, RAGHAVENDRA G · 2020 to 2025
$7.1M
Organ Specific ProjectU54DK127823 · NIDDK · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI CAMPBELL-THOMPSON, MARTHA, CARSON, JAMES PAUL · 2020 to 2023
$5.1M
Robust Mass Spectrometric Protein/Peptide Assays for Type 1 Diabetes Clinical ApplicationsU01DK137113 · NIDDK · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI Wei-Jun Qian, Jun Qu · 2023 to 2026
$3.8M
Pathways and Regulators Driving Progressive Islet Cell Dysfunction in Type 1 DiabetesR01DK122160 · NIDDK · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI ROHIT N. KULKARNI, CLAYTON E MATHEWS · 2019 to 2026
$3.7M
Alternative RNA splicing events contribute to the onset of islet dysfunction in T1DU01DK127505 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI NAKAYASU, ERNESTO SATOSHI, SUSSEL, LORI · 2020 to 2023
$2.9M
Discovery and Roles of In Situ Islet Neoantigens in Human Type 1 DiabetesR01DK135081 · NIDDK · UNIVERSITY OF FLORIDA · PI CLAYTON E MATHEWS, DAVID A OSTROV · 2023 to 2026
$2.8M
Systematic validation of biomarkers predictive of IA and T1D and their relationship with disease developmentR01DK138335 · NIDDK · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI Thomas O Metz, Ernesto Satoshi Nakayasu · 2024 to 2026
$1.9M
NIDDK NIH HHS R01 DK122160NIDDK NIH HHS R01 DK135081NIDDK NIH HHS R01 DK138335NIDDK NIH HHS U01 DK127505NIDDK NIH HHS U01 DK127786NIDDK NIH HHS U01 DK137113NIDDK NIH HHS U24 DK104162NIDDK NIH HHS U54 DK127823
6 · The paper itself

Abstract

Type 1 diabetes (T1D) is a devastating autoimmune disease for which advanced mass spectrometry (MS) methods are increasingly used to identify new biomarkers and better understand underlying mechanisms. For example, integration of MS analysis and machine learning has identified multimolecular biomarker panels. In mechanistic studies, MS has contributed to the discovery of neoepitopes, and pathways involved in disease development and identifying therapeutic targets. However, challenges remain in understanding the role of tissue microenvironments, spatial heterogeneity, and environmental factors in disease pathogenesis. Recent advancements in MS, such as ultra-fast ion-mobility separations, and single-cell and spatial omics, can play a central role in addressing these challenges. Here, we review recent advancements in MS-based molecular measurements and their role in understanding T1D.

Indexed as

BiomarkersDiabetes Mellitus, Type 1Mass SpectrometryAnimalsHumansMachine LearningProteomicsBiomarkersbiomarkerscross-linking MSion mobility spectrometrymachine learningmass spectrometrymetabolite dark matterneoepitopessingle-cell MSspacial omicstype 1 diabetes

Identifiers

PMID39152082
PMCPMC11631641

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.