Evidence map›Paper›PMID 39151742›Full record

ArticleJournal of structural biology2024

Cryo-EM reconstruction of oleate hydratase bound to a phospholipid membrane bilayer.

Michael L Oldham, M Zuhaib Qayyum, Ravi C Kalathur, Charles O Rock, Christopher D Radka

Abstract read
In one paragraph

Article in Journal of structural biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Michael L OldhamDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
M Zuhaib QayyumDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Ravi C KalathurDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Charles O RockDepartment of Host Microbe Interactions, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
Christopher D RadkaDepartment of Host Microbe Interactions, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA; Department of Microbiology, Immunology, and Molecular Genetics, University of Kentucky, Lexington, KY, 40536, USA. Electronic address: christopher.radka@uky.edu.

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
REGULATION OF LIPID METABOLISM IN E COLIR01GM034496 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI ROCK, CHARLES O · 1985 to 2022
$9.2M
Bacterial anti-inflammatory lipid mediatorsR00AI166116 · NIAID · UNIVERSITY OF KENTUCKY · PI RADKA, CHRISTOPHER DAVID · 2023 to 2025
$733k
NCI NIH HHS P30 CA021765NIAID NIH HHS R00 AI166116NIGMS NIH HHS R01 GM034496
6 · The paper itself

Abstract

Oleate hydratase (OhyA) is a bacterial peripheral membrane protein that catalyzes FAD-dependent water addition to membrane bilayer-embedded unsaturated fatty acids. The opportunistic pathogen Staphylococcus aureus uses OhyA to counteract the innate immune system and support colonization. Many Gram-positive and Gram-negative bacteria in the microbiome also encode OhyA. OhyA is a dimeric flavoenzyme whose carboxy terminus is identified as the membrane binding domain; however, understanding how OhyA binds to cellular membranes is not complete until the membrane-bound structure has been elucidated. All available OhyA structures depict the solution state of the protein outside its functional environment. Here, we employ liposomes to solve the cryo-electron microscopy structure of the functional unit: the OhyA•membrane complex. The protein maintains its structure upon membrane binding and slightly alters the curvature of the liposome surface. OhyA preferentially associates with 20-30 nm liposomes with multiple copies of OhyA dimers assembling on the liposome surface resulting in the formation of higher-order oligomers. Dimer assembly is cooperative and extends along a formed ridge of the liposome. We also solved an OhyA dimer of dimers structure that recapitulates the intermolecular interactions that stabilize the dimer assembly on the membrane bilayer as well as the crystal contacts in the lattice of the OhyA crystal structure. Our work enables visualization of the molecular trajectory of membrane binding for this important interfacial enzyme.

Indexed as

Cryoelectron MicroscopyLipid BilayersLiposomesStaphylococcus aureusBacterial ProteinsCell MembraneHydro-LyasesMembrane ProteinsModels, MolecularPhospholipidsProtein BindingBacterial ProteinsHydro-LyasesLipid BilayersLiposomesMembrane ProteinsPhospholipidsCryo-electron microscopy (cryo-EM)Lipid-protein interactionLiposomeMembraneOleate hydratase (OhyA)Phospholipid

Identifiers

PMID39151742
PMCPMC11385989

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.