Evidence map›Paper›PMID 39149346›Full record

ArticlebioRxiv : the preprint server for biology2024

A spatial atlas of mitochondrial gene expression reveals dynamic translation hubs and remodeling in stress.

Adam Begeman, John A Smolka, Ahmad Shami, Tejashree Pradip Waingankar, Samantha C Lewis

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Adam BegemanDepartment of Molecular and Cell Biology, University of California, Berkeley, CA USA.ORCID 0000-0001-5458-8610
John A SmolkaDepartment of Molecular and Cell Biology, University of California, Berkeley, CA USA.
Ahmad ShamiDepartment of Molecular and Cell Biology, University of California, Berkeley, CA USA.ORCID 0009-0006-8383-6496
Tejashree Pradip WaingankarDepartment of Molecular and Cell Biology, University of California, Berkeley, CA USA.ORCID 0000-0001-8301-7315
Samantha C LewisDepartment of Molecular and Cell Biology, University of California, Berkeley, CA USA.ORCID 0000-0001-6306-443X

Funding

Systems analysis of mitochondrial genome maintenance in physiological contextR35GM147218 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Samantha C Lewis · 2022 to 2026
$2.1M
Molecular mechanisms of mtDNA inheritanceR00GM129456 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI LEWIS, SAMANTHA C · 2020 to 2022
$747k
NIGMS NIH HHS R00 GM129456NIGMS NIH HHS R35 GM147218
6 · The paper itself

Abstract

Mitochondrial genome expression is important for cellular bioenergetics. How mitochondrial RNA processing and translation are spatially organized across dynamic mitochondrial networks is not well understood. Here, we report that processed mitochondrial RNAs are consolidated with mitoribosome components into translation hubs distal to either nucleoids or processing granules in human cells. During stress, these hubs are remodeled into translationally repressed mesoscale bodies containing messenger, ribosomal, and double-stranded RNA. We show that the highly conserved helicase SUV3 contributes to the distribution of processed RNA within mitochondrial networks, and that stress bodies form downstream of proteostatic stress in cells lacking SUV3 unwinding activity. We propose that the spatial organization of nascent chain synthesis into discrete domains serves to throttle the flow of genetic information in stress to ensure mitochondrial quality control.

Identifiers

PMID39149346
PMCPMC11326164

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.