Evidence map›Paper›PMID 39149333›Full record

ArticlebioRxiv : the preprint server for biology2024

Genome-Wide Association Study and transcriptome analysis reveals a complex gene network that regulates opsin gene expression and cell fate determination in

John C Aldrich, Lauren A Vanderlinden, Thomas L Jacobsen, Cheyret Wood, Laura M Saba, Steven G Britt

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

John C AldrichDepartment of Neurology, Department of Ophthalmology, Dell Medical School; University of Texas at Austin, Austin, TX 78712.ORCID 0000-0002-4885-924X
Lauren A VanderlindenDepartment of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado Anschutz Medical Campus, Aurora, CO 80045.ORCID 0000-0002-4019-8395
Thomas L JacobsenDepartment of Neurology, Department of Ophthalmology, Dell Medical School; University of Texas at Austin, Austin, TX 78712.ORCID 0000-0003-4453-7670
Cheyret WoodDepartment of Biostatistics and Informatics, Colorado School of Public Health, University of Colorado Anschutz Medical Campus, Aurora, CO 80045.ORCID 0000-0002-9418-4917
Laura M SabaDepartment of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Anschutz Medical Campus, Aurora, CO 80045.ORCID 0000-0001-9649-1294
Steven G BrittDepartment of Neurology, Department of Ophthalmology, Dell Medical School; University of Texas at Austin, Austin, TX 78712.ORCID 0000-0001-7656-7984

Funding

Transcriptional Profiles of Visual System ImpairmentR21EY032663 · NEI · UNIVERSITY OF TEXAS AT AUSTIN · PI ALDRICH, JOHN CALVIN · 2021 to 2022
$444k
Genome Wide Association Study of Stochastic Cell Fate Determination In DrosophilaR21EY024413 · NEI · UNIVERSITY OF COLORADO DENVER · PI BRITT, STEVEN G · 2015 to 2016
$427k
NEI NIH HHS R21 EY024413NEI NIH HHS R21 EY032663
6 · The paper itself

Abstract

Background: An animal's ability to discriminate between differing wavelengths of light (i.e., color vision) is mediated, in part, by a subset of photoreceptor cells that express opsins with distinct absorption spectra. In Results: We examined Rh3 and Rh4 expression in a subset of fully-sequenced inbred strains from the Conclusions: Collectively, these results suggest that the relatively simple, binary cell fate decision underlying R7 opsin expression is modulated by a larger, more complex network of regulatory factors. Of particular interest are a subset of candidate genes with previously characterized neuronal functions including neurogenesis, neurodegeneration, photoreceptor development, axon growth and guidance, synaptogenesis, and synaptic function.

Indexed as

cell fateColor visionDrosophilagenome wide association studyphotoreceptorsquantitative geneticsretinaRNA-Seqstochasticity

Identifiers

PMID39149333
PMCPMC11326169

What OpenQuestion holds

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LicenceCC BY-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.