Evidence map›Paper›PMID 39149331›Full record

ArticlebioRxiv : the preprint server for biology2024

Generative AI for Cell Type-Specific Fluorescence Image Generation of hPSC-derived Cardiac Organoid.

Arun Kumar Reddy Kandula, Tanakit Phamornratanakun, Angello Huerta Gomez, Marcel El-Mokahal, Zhen Ma, Yunhe Feng, Huaxiao Yang

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Arun Kumar Reddy KandulaDepartment of Biomedical Engineering, University of North Texas, Denton TX, USA.
Tanakit PhamornratanakunDepartment of Biomedical Engineering, University of North Texas, Denton TX, USA.
Angello Huerta GomezDepartment of Biomedical Engineering, University of North Texas, Denton TX, USA.
Marcel El-MokahalDepartment of Biomedical Engineering, University of North Texas, Denton TX, USA.
Zhen MaDepartment of Biomedical & Chemical Engineering, Syracuse University, Syracuse NY, USA.
Yunhe FengDepartment of Computer Science & Engineering, University of North Texas, Denton TX, USA.
Huaxiao YangDepartment of Biomedical Engineering, University of North Texas, Denton TX, USA.

Funding

Establishing an In Vitro Embryotoxicity Risk Classification System Based on Human Cardiac Organoid ModelR01HD101130 · NICHD · SYRACUSE UNIVERSITY · PI MA, ZHEN · 2020 to 2025
$2.3M
G-RISE at the University of North TexasT32GM136501 · NIGMS · UNIVERSITY OF NORTH TEXAS · PI BURGGREN, WARREN, HUGHES, LEE · 2021 to 2024
$1.8M
NOTCH signaling on the underdeveloped cardiac vascularization of hypoplastic left heart syndrome in the hiPSC-derived vascularized cardiac organoidsR15HD108720 · NICHD · UNIVERSITY OF NORTH TEXAS · PI YANG, HUAXIAO · 2022 to 2022
$438k
NICHD NIH HHS R01 HD101130NICHD NIH HHS R15 HD108720NIGMS NIH HHS T32 GM136501
6 · The paper itself

Abstract

Human pluripotent stem cell (hPSC)-derived cardiac organoid is the most recent three-dimensional tissue structure that mimics the structure and functionality of the human heart and plays a pivotal role in modeling heart development and disease. The hPSC-derived cardiac organoids are commonly characterized by bright-field microscopic imaging for tracking daily organoid differentiation and morphology formation. Although the brightfield microscope provides essential information about hPSC-derived cardiac organoids, such as morphology, size, and general structure, it does not extend our understanding of cardiac organoids on cell type-specific distribution and structure. Then, fluorescence microscopic imaging is required to identify the specific cardiovascular cell types in the hPSC-derived cardiac organoids by fluorescence immunostaining fixed organoid samples or fluorescence reporter imaging of live organoids. Both approaches require extra steps of experiments and techniques and do not provide general information on hPSC-derived cardiac organoids from different batches of differentiation and characterization, which limits the biomedical applications of hPSC-derived cardiac organoids. This research addresses this limitation by proposing a comprehensive workflow for colorizing phase contrast images of cardiac organoids from brightfield microscopic imaging using conditional Generative Adversarial Networks (GANs) to provide cardiovascular cell type-specific information in hPSC-derived cardiac organoids. By infusing these phase contrast images with accurate fluorescence colorization, our approach aims to unlock the hidden wealth of cell type, structure, and further quantifications of fluorescence intensity and area, for better characterizing hPSC-derived cardiac organoids.

Indexed as

Cardiac OrganoidsGenerative Adversarial NetworksHuman pluripotent stem cell (hPSC)Image colorizationU-Net

Identifiers

PMID39149331
PMCPMC11326121

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.