Evidence map›Paper›PMID 39148908›Full record

ArticleFrontiers in oncology2024

Assessing clinical efficacy of polyp detection models using open-access datasets.

Gabriel Marchese Aizenman, Pietro Salvagnini, Andrea Cherubini, Carlo Biffi

Abstract read
In one paragraph

Article in Frontiers in oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Gabriel Marchese AizenmanCosmo Intelligent Medical Devices, Dublin, Ireland.
Pietro SalvagniniCosmo Intelligent Medical Devices, Dublin, Ireland.
Andrea CherubiniCosmo Intelligent Medical Devices, Dublin, Ireland.
Carlo BiffiCosmo Intelligent Medical Devices, Dublin, Ireland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Ensuring accurate polyp detection during colonoscopy is essential for preventing colorectal cancer (CRC). Recent advances in deep learning-based computer-aided detection (CADe) systems have shown promise in enhancing endoscopists' performances. Effective CADe systems must achieve high polyp detection rates from the initial seconds of polyp appearance while maintaining low false positive (FP) detection rates throughout the procedure. Method: We integrated four open-access datasets into a unified platform containing over 340,000 images from various centers, including 380 annotated polyps, with distinct data splits for comprehensive model development and benchmarking. The REAL-Colon dataset, comprising 60 full-procedure colonoscopy videos from six centers, is used as the fifth dataset of the platform to simulate clinical conditions for model evaluation on unseen center data. Performance assessment includes traditional object detection metrics and new metrics that better meet clinical needs. Specifically, by defining detection events as sequences of consecutive detections, we compute per-polyp recall at early detection stages and average per-patient FPs, enabling the generation of Free-Response Receiver Operating Characteristic (FROC) curves. Results: Using YOLOv7, we trained and tested several models across the proposed data splits, showcasing the robustness of our open-access platform for CADe system development and benchmarking. The introduction of new metrics allows for the optimization of CADe operational parameters based on clinically relevant criteria, such as per-patient FPs and early polyp detection. Our findings also reveal that omitting full-procedure videos leads to non-realistic assessments and that detecting small polyp bounding boxes poses the greatest challenge. Conclusion: This study demonstrates how newly available open-access data supports ongoing research progress in environments that closely mimic clinical settings. The introduced metrics and FROC curves illustrate CADe clinical efficacy and can aid in tuning CADe hyperparameters.

Indexed as

artificial intelligencecolonoscopydeep learningFROCpolyp detection

Identifiers

PMID39148908
PMCPMC11324571

What OpenQuestion holds

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.