Evidence map›Paper›PMID 39148799›Full record

ArticleChemical science2024

Stable and accurate atomistic simulations of flexible molecules using conformationally generalisable machine learned potentials.

Christopher D Williams, Jas Kalayan, Neil A Burton, Richard A Bryce

Abstract read
In one paragraph

Article in Chemical science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Christopher D WilliamsDivision of Pharmacy and Optometry, School of Health Sciences, Faculty of Biology, Medicine and Health, The University of Manchester Oxford Road Manchester M13 9PL UK christopher.williams@manchester.ac.uk richard.bryce@manchester.ac.uk.ORCID https://orcid.org/0000-0002-5073-5924
Jas KalayanScience and Technologies Facilities Council (STFC), Daresbury Laboratory Keckwick Lane, Daresbury Warrington WA4 4AD UK.ORCID https://orcid.org/0000-0002-6833-1864
Neil A BurtonDepartment of Chemistry, School of Natural Sciences, Faculty of Science and Engineering, The University of Manchester Oxford Road Manchester M13 9PL UK.ORCID https://orcid.org/0000-0001-5773-3844
Richard A BryceDivision of Pharmacy and Optometry, School of Health Sciences, Faculty of Biology, Medicine and Health, The University of Manchester Oxford Road Manchester M13 9PL UK christopher.williams@manchester.ac.uk richard.bryce@manchester.ac.uk.ORCID https://orcid.org/0000-0002-8145-2345

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Computational simulation methods based on machine learned potentials (MLPs) promise to revolutionise shape prediction of flexible molecules in solution, but their widespread adoption has been limited by the way in which training data is generated. Here, we present an approach which allows the key conformational degrees of freedom to be properly represented in reference molecular datasets. MLPs trained on these datasets using a global descriptor scheme are generalisable in conformational space, providing quantum chemical accuracy for all conformers. These MLPs are capable of propagating long, stable molecular dynamics trajectories, an attribute that has remained a challenge. We deploy the MLPs in obtaining converged conformational free energy surfaces for flexible molecules

Identifiers

PMID39148799
PMCPMC11323334

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.