Evidence map›Paper›PMID 39148626›Full record

ArticleNpj biological timing and sleep2024

Evidence for ~12-h ultradian gene programs in humans.

Bokai Zhu, Silvia Liu, Natalie L David, William Dion, Nandini K Doshi, Lauren B Siegel, Tânia Amorim, Rosemary E Andrews, G V Naveen Kumar, Hanwen Li and 6 more

Abstract read
In one paragraph

Article in Npj biological timing and sleep, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. SON-dependent nuclear speckle rehabilitation alleviates proteinopathies.bioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Bokai ZhuAging Institute of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, PA USA.
Silvia LiuPittsburgh Liver Research Center, University of Pittsburgh, Pittsburgh, PA USA.
Natalie L DavidAging Institute of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, PA USA.
William DionAging Institute of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, PA USA.
Nandini K DoshiAging Institute of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, PA USA.
Lauren B SiegelNeuroendocrinology Unit, Division of Endocrinology and Metabolism, Department of Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA USA.
Tânia AmorimAging Institute of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, PA USA.
Rosemary E AndrewsAging Institute of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, PA USA.
G V Naveen KumarAging Institute of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, PA USA.
Hanwen LiDepartment of Statistics, Kenneth P. Dietrich School of Arts and Sciences, University of Pittsburgh, Pittsburgh, PA USA.
Saad IrfanAging Institute of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, PA USA.
Tristan PesaresiAging Institute of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, PA USA.
Ankit X SharmaAging Institute of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, PA USA.
Michelle SunAging Institute of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, PA USA.
Pouneh K FazeliNeuroendocrinology Unit, Division of Endocrinology and Metabolism, Department of Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA USA.
Matthew L SteinhauserAging Institute of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, PA USA.

Funding

Pittsburgh Liver Research CenterP30DK120531 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Gavin E Arteel · 2019 to 2026
$10.9M
T32 Research Training in Diabetes and EndocrinologyT32DK007052 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ROBERT M O'DOHERTY · 1986 to 2026
$6.3M
Decoding the regulation and functions of mammalian 12h-clockDP2GM140924 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ZHU, BOKAI · 2020 to 2020
$2.4M
High-Throughput Computing for Genomics and Bioinformatics ResearchS10OD028483 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEE, ADRIAN V · 2021 to 2021
$574k
Ultradian to circadian transcriptome re-wiring underlies liver agingR21AG071893 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ZHU, BOKAI · 2022 to 2023
$437k
NIA NIH HHS R21 AG071893NIDDK NIH HHS P30 DK120531NIDDK NIH HHS T32 DK007052NIGMS NIH HHS DP2 GM140924NIH HHS S10 OD028483
6 · The paper itself

Abstract

Mice and many marine organisms exhibit ~12-h ultradian rhythms, however, direct evidence of ~12-h ultradian rhythms in humans is lacking. Here, we performed prospective, temporal transcriptome profiling of peripheral white blood cells from three healthy humans. All three participants independently exhibited robust ~12-h transcriptional rhythms in molecular programs involved in RNA and protein metabolism, with strong homology to circatidal gene programs previously identified in Cnidarian marine species.

Indexed as

Cell biologyDiseases

Identifiers

PMID39148626
PMCPMC11325440

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.