Evidence map›Paper›PMID 39147927›Full record

ArticleNature chemical biology2025

Engineered IscB-ωRNA system with expanded target range for base editing.

Qingquan Xiao, Guoling Li, Dingyi Han, Haoqiang Wang, Mingyu Yao, Tingting Ma, Jingxing Zhou, Yu Zhang, Xiumei Zhang, Bingbing He and 6 more

Abstract read
In one paragraph

Article in Nature chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Compact 9dBEs Enable Efficient and Precise Genome Editing in Mammalian Cells and In Vivo.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Structural visualization of the molecular evolution of CRISPR-Cas9.Nature structural & molecular biology · 2026
    Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Review
  17. Highly efficient genome editing inSynthetic and systems biotechnology · 2025
    Article
  18. Molecular therapy. Nucleic acids · 2025
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Qingquan Xiao *HuidaGene Therapeutics Co. Ltd., Shanghai, China.ORCID http://orcid.org/0000-0003-3921-9395
Guoling Li *HuidaGene Therapeutics Co. Ltd., Shanghai, China.ORCID http://orcid.org/0000-0003-0422-6157
Dingyi Han *Institute of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Shanghai Research Center for Brain Science and Brain-Inspired Intelligence, Chinese Academy of Sciences, Shanghai, China.ORCID http://orcid.org/0009-0003-4901-7567
Haoqiang Wang *HuidaGene Therapeutics Co. Ltd., Shanghai, China.ORCID http://orcid.org/0000-0003-4944-1117
Mingyu Yao *Eye Institute and Department of Ophthalmology, Eye & ENT Hospital, Fudan University, Shanghai, China.ORCID http://orcid.org/0000-0003-4731-4595
Tingting MaHuidaGene Therapeutics Co. Ltd., Shanghai, China.
Jingxing ZhouHuidaGene Therapeutics Co. Ltd., Shanghai, China.
Yu ZhangHuidaGene Therapeutics Co. Ltd., Shanghai, China.
Xiumei ZhangHuidaGene Therapeutics Co. Ltd., Shanghai, China.
Bingbing HeInstitute of Neuroscience, CAS Center for Excellence in Brain Science and Intelligence Technology, Shanghai Research Center for Brain Science and Brain-Inspired Intelligence, Chinese Academy of Sciences, Shanghai, China.ORCID http://orcid.org/0000-0002-9790-8087
Yuan YuanHuidaGene Therapeutics Co. Ltd., Shanghai, China.
Linyu ShiHuidaGene Therapeutics Co. Ltd., Shanghai, China.ORCID http://orcid.org/0009-0005-2040-0081
Tong LiHuidaGene Therapeutics Co. Ltd., Shanghai, China. tongli@huidagene.com.ORCID http://orcid.org/0009-0001-3934-9184
Hui YangHuidaGene Therapeutics Co. Ltd., Shanghai, China. huiyang@huidagene.com.ORCID http://orcid.org/0000-0002-8023-0230
Jinhai HuangEye Institute and Department of Ophthalmology, Eye & ENT Hospital, Fudan University, Shanghai, China. jinhaihuang@fudan.edu.cn.ORCID http://orcid.org/0000-0001-9952-3175
Hainan ZhangHuidaGene Therapeutics Co. Ltd., Shanghai, China. zhanghainan@simm.ac.cn.ORCID http://orcid.org/0000-0002-1058-0462

Funding

National Natural Science Foundation of China (National Science Foundation of China) 31925016National Natural Science Foundation of China (National Science Foundation of China) 82021001National Natural Science Foundation of China (National Science Foundation of China) 82271048
6 · The paper itself

Abstract

As the evolutionary ancestor of Cas9 nuclease, IscB proteins serve as compact RNA-guided DNA endonucleases and nickases, making them strong candidates for base editing. Nevertheless, the narrow targeting scope limits the application of IscB systems; thus, it is necessary to find more IscBs that recognize different target-adjacent motifs (TAMs). Here, we identified 10 of 19 uncharacterized IscB proteins from uncultured microbes with activity in mammalian cells. Through protein and ωRNA engineering, we further enhanced the activity of IscB ortholog IscB.m16 and expanded its TAM scope from MRNRAA to NNNGNA, resulting in a variant named IscB.m16*. By fusing the deaminase domains with IscB.m16* nickase, we generated IscB.m16*-derived base editors that exhibited robust base-editing efficiency in mammalian cells and effectively restored Duchenne muscular dystrophy proteins in diseased mice through single adeno-associated virus delivery. Thus, this study establishes a set of compact base-editing tools for basic research and therapeutic applications.

Indexed as

Gene EditingMuscular Dystrophy, DuchenneAnimalsBacterial ProteinsCRISPR-Cas SystemsDependovirusHEK293 CellsHumansMiceRNARNA, Guide, CRISPR-Cas SystemsBacterial ProteinsRNARNA, Guide, CRISPR-Cas Systems

Identifiers

PMID39147927
PMCPMC11666462

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.