Evidence map›Paper›PMID 39147831›Full record

ArticleNature medicine2024

DNA liquid biopsy-based prediction of cancer-associated venous thromboembolism.

Justin Jee, A Rose Brannon, Rohan Singh, Andriy Derkach, Christopher Fong, Adrian Lee, Lauren Gray, Karl Pichotta, Anisha Luthra, Monica Diosdado and 17 more

Abstract read
In one paragraph

Article in Nature medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Interpretable deep learning model of circulating genomics for quantitative survival prediction in advanced non-small cell lung cancer.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Justin JeeMemorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0001-9783-0139
A Rose BrannonMemorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0003-4610-0149
Rohan SinghMemorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0009-0003-1326-7249
Andriy DerkachMemorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0003-2178-8493
Christopher FongMemorial Sloan Kettering Cancer Center, New York, NY, USA.
Adrian LeeGenesisCare, University of Sydney, Sydney, New South Wales, Australia.
Lauren GrayGenesisCare, University of Sydney, Sydney, New South Wales, Australia.
Karl PichottaMemorial Sloan Kettering Cancer Center, New York, NY, USA.
Anisha LuthraMemorial Sloan Kettering Cancer Center, New York, NY, USA.
Monica DiosdadoMemorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-3475-9985
Mohammad HaqueMemorial Sloan Kettering Cancer Center, New York, NY, USA.
Jiannan GuoResolution Bioscience, Exact Sciences, Kirkland, WA, USA.
Jennifer HernandezResolution Bioscience, Exact Sciences, Kirkland, WA, USA.
Kavita GargResolution Bioscience, Exact Sciences, Kirkland, WA, USA.
Clare WilhelmMemorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0003-2437-5387
Maria E ArcilaMemorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0001-5824-6554
Nick PavlakisGenesisCare, University of Sydney, Sydney, New South Wales, Australia.
Stephen ClarkeGenesisCare, University of Sydney, Sydney, New South Wales, Australia.ORCID 0000-0001-5817-1222
Sohrab P ShahMemorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0001-6402-523X
Pedram RazaviMemorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0003-4236-0576
Jorge S Reis-FilhoMemorial Sloan Kettering Cancer Center, New York, NY, USA.
Marc LadanyiMemorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0001-9055-7213
Nikolaus SchultzMemorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-0131-4904
Jeffrey ZwickerMemorial Sloan Kettering Cancer Center, New York, NY, USA.
Michael F BergerMemorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0003-3882-5000
Bob T LiMemorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0001-6661-8733
Simon ManthaMemorial Sloan Kettering Cancer Center, New York, NY, USA. manthas@mskcc.org.ORCID 0000-0003-4277-5261

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Investigational Cancer Therapeutics Training Program (ICTTP)T32CA009207 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Omar Abdel-Wahab, Alexander Drilon · 1985 to 2026
$13.7M
MSK Paul Calabresi Career Development Award for Clinical OncologyK12CA184746 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Omar Abdel-Wahab, Simon N. Powell · 2015 to 2026
$8.3M
NCI NIH HHS K12 CA184746NCI NIH HHS P30 CA008748NCI NIH HHS T32 CA009207
6 · The paper itself

Abstract

Cancer-associated venous thromboembolism (VTE) is a major source of oncologic cost, morbidity and mortality. Identifying high-risk patients for prophylactic anticoagulation is challenging and adds to clinician burden. Circulating tumor DNA (ctDNA) sequencing assays ('liquid biopsies') are widely implemented, but their utility for VTE prognostication is unknown. Here we analyzed three plasma sequencing cohorts: a pan-cancer discovery cohort of 4,141 patients with non-small cell lung cancer (NSCLC) or breast, pancreatic and other cancers; a prospective validation cohort consisting of 1,426 patients with the same cancer types; and an international generalizability cohort of 463 patients with advanced NSCLC. ctDNA detection was associated with VTE independent of clinical and radiographic features. A machine learning model trained on liquid biopsy data outperformed previous risk scores (discovery, validation and generalizability c-indices 0.74, 0.73 and 0.67, respectively, versus 0.57, 0.61 and 0.54 for the Khorana score). In real-world data, anticoagulation was associated with lower VTE rates if ctDNA was detected (n = 2,522, adjusted hazard ratio (HR) = 0.50, 95% confidence interval (CI): 0.30-0.81); ctDNA

Indexed as

Circulating Tumor DNANeoplasmsVenous ThromboembolismAdultAgedAnticoagulantsCarcinoma, Non-Small-Cell LungFemaleHumansLiquid BiopsyMachine LearningMaleMiddle AgedPrognosisProspective StudiesAnticoagulantsCirculating Tumor DNA

Identifiers

PMID39147831
PMCPMC11405286

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.