Evidence map›Paper›PMID 39147782›Full record

ReviewNPJ systems biology and applications2024

Insights gained from computational modeling of YAP/TAZ signaling for cellular mechanotransduction.

Hamidreza Jafarinia, Ali Khalilimeybodi, Jorge Barrasa-Fano, Stephanie I Fraley, Padmini Rangamani, Aurélie Carlier

Abstract readReview
In one paragraph

Review in NPJ systems biology and applications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

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  15. Models of Cellular Mechanosensation.Results and problems in cell differentiation · 2026
    Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hamidreza JafariniaMERLN Institute for Technology-Inspired Regenerative Medicine, Department of Cell Biology-Inspired Tissue Engineering, Maastricht University, Maastricht, The Netherlands.ORCID http://orcid.org/0000-0003-1205-2978
Ali KhalilimeybodiDepartment of Mechanical and Aerospace Engineering, University of California San Diego, La Jolla, CA, 92093-0411, USA.
Jorge Barrasa-FanoDepartment of Mechanical Engineering, Biomechanics Section, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0002-8650-0457
Stephanie I FraleyDepartment of Bioengineering, University of California San Diego, La Jolla, CA, 92093-0411, USA.
Padmini RangamaniDepartment of Mechanical and Aerospace Engineering, University of California San Diego, La Jolla, CA, 92093-0411, USA. prangamani@ucsd.edu.ORCID http://orcid.org/0000-0001-5953-4347
Aurélie CarlierMERLN Institute for Technology-Inspired Regenerative Medicine, Department of Cell Biology-Inspired Tissue Engineering, Maastricht University, Maastricht, The Netherlands. a.carlier@maastrichtuniversity.nl.ORCID http://orcid.org/0000-0002-2305-5667

Funding

TR&D 3 - Network Guided Machine LearningP41GM103504 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI IDEKER, TREY · 2012 to 2024
$17.3M
The Cancer Cell Map Initiative v2.0U54CA274502 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Stephanie Irene Fraley · 2022 to 2026
$14.2M
CRCNS: Biophysical modeling of axonal morphology and functionR01MH139350 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Padmini Rangamani · 2024 to 2026
$1.1M
American Cancer Society (American Cancer Society, Inc.) RSG-21-033-01-CSMFonds Wetenschappelijk Onderzoek (Research Foundation Flanders) 1259223NNCI NIH HHS U54 CA274502Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) 024.003.013NIGMS NIH HHS P41 GM103504NIMH NIH HHS R01 MH139350U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) U54CA274502
6 · The paper itself

Abstract

YAP/TAZ signaling pathway is regulated by a multiplicity of feedback loops, crosstalk with other pathways, and both mechanical and biochemical stimuli. Computational modeling serves as a powerful tool to unravel how these different factors can regulate YAP/TAZ, emphasizing biophysical modeling as an indispensable tool for deciphering mechanotransduction and its regulation of cell fate. We provide a critical review of the current state-of-the-art of computational models focused on YAP/TAZ signaling.

Indexed as

Computer SimulationMechanotransduction, CellularTranscription FactorsAdaptor Proteins, Signal TransducingAnimalsHumansModels, BiologicalSignal TransductionYAP-Signaling ProteinsAdaptor Proteins, Signal TransducingTranscription FactorsYAP1 protein, humanYAP-Signaling Proteins

Identifiers

PMID39147782
PMCPMC11327324

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.