Evidence map›Paper›PMID 39146425›Full record

ArticleScience (New York, N.Y.)2024

Structure and inhibition of SARS-CoV-2 spike refolding in membranes.

Michael W Grunst, Zhuan Qin, Esteban Dodero-Rojas, Shilei Ding, Jérémie Prévost, Yaozong Chen, Yanping Hu, Marzena Pazgier, Shenping Wu, Xuping Xie and 5 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
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  5. Review
  6. Article
  7. Article
  8. TMPRSS2-mediated coronavirus spike activation and inhibition.Nature structural & molecular biology · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Exceptionally broad HIV-1 neutralization via bispecific antibody-mediated prepositioning.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Michael W GrunstDepartment of Microbial Pathogenesis, Yale University, New Haven, CT, USA.ORCID 0000-0002-8575-8026
Zhuan Qin *Department of Microbial Pathogenesis, Yale University, New Haven, CT, USA.ORCID 0000-0001-9112-7645
Esteban Dodero-Rojas *Center for Theoretical Biological Physics, Rice University, Houston, TX, USA.ORCID 0000-0001-9054-9555
Shilei DingCentre de Recherche du CHUM, Montréal, QC H2X 0A9, Canada.
Jérémie PrévostCentre de Recherche du CHUM, Montréal, QC H2X 0A9, Canada.ORCID 0000-0002-5260-5154
Yaozong ChenInfectious Disease Division, Department of Medicine, Uniformed Services University of the Health Sciences, Bethesda, MD 20814-4712, USA.
Yanping HuDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, USA.
Marzena PazgierInfectious Disease Division, Department of Medicine, Uniformed Services University of the Health Sciences, Bethesda, MD 20814-4712, USA.ORCID 0000-0003-0594-5057
Shenping WuDepartment of Pharmacology, Yale University, West Haven, CT 06516, USA.
Xuping XieDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, USA.ORCID 0000-0003-0918-016X
Andrés FinziCentre de Recherche du CHUM, Montréal, QC H2X 0A9, Canada.ORCID 0000-0002-4992-5288
José N OnuchicCenter for Theoretical Biological Physics, Rice University, Houston, TX, USA.ORCID 0000-0002-9448-0388
Paul C WhitfordCenter for Theoretical Biological Physics, Northeastern University, Boston, MA, USA.ORCID 0000-0001-7104-2265
Walther MothesDepartment of Microbial Pathogenesis, Yale University, New Haven, CT, USA.ORCID 0000-0002-3367-7240
Wenwei LiDepartment of Microbial Pathogenesis, Yale University, New Haven, CT, USA.ORCID 0000-0003-3008-6901

Funding

Structure and Dynamics of the SARS-CoV-2 Spike ProteinR01AI163395 · NIAID · YALE UNIVERSITY · PI MOTHES, WALTHER H · 2021 to 2025
$4.1M
Predoctoral Training Program in VirologyT32AI055403 · NIAID · YALE UNIVERSITY · PI KUMAR, PRITI, MOTHES, WALTHER H · 2003 to 2024
$3.6M
Elucidating the mechanisms that enable translation in bacterial and eukaryotic ribosomesR35GM153502 · NIGMS · NORTHEASTERN UNIVERSITY · PI Paul Charles Whitford · 2024 to 2026
$1.3M
In situ structures of SARS-CoV-2 Spike fusion intermediates and Spike-antibody-Fc receptor complexesF31AI176650 · NIAID · YALE UNIVERSITY · PI GRUNST, MICHAEL WILLIAM · 2024 to 2025
$74k
NIAID NIH HHS F31 AI176650NIAID NIH HHS R01 AI163395NIAID NIH HHS T32 AI055403NIGMS NIH HHS R35 GM153502
6 · The paper itself

Abstract

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike protein binds the receptor angiotensin converting enzyme 2 (ACE2) and drives virus-host membrane fusion through refolding of its S2 domain. Whereas the S1 domain contains high sequence variability, the S2 domain is conserved and is a promising pan-betacoronavirus vaccine target. We applied cryo-electron tomography to capture intermediates of S2 refolding and understand inhibition by antibodies to the S2 stem-helix. Subtomogram averaging revealed ACE2 dimers cross-linking spikes before transitioning into S2 intermediates, which were captured at various stages of refolding. Pan-betacoronavirus neutralizing antibodies targeting the S2 stem-helix bound to and inhibited refolding of spike prehairpin intermediates. Combined with molecular dynamics simulations, these structures elucidate the process of SARS-CoV-2 entry and reveal how pan-betacoronavirus S2-targeting antibodies neutralize infectivity by arresting prehairpin intermediates.

Indexed as

Angiotensin-Converting Enzyme 2Antibodies, NeutralizingAntibodies, ViralCryoelectron MicroscopyMolecular Dynamics SimulationProtein DomainsSARS-CoV-2Spike Glycoprotein, CoronavirusCell MembraneCOVID-19Electron Microscope TomographyHumansPeptidyl-Dipeptidase AProtein MultimerizationProtein RefoldingVirus InternalizationACE2 protein, humanAngiotensin-Converting Enzyme 2Antibodies, NeutralizingAntibodies, ViralPeptidyl-Dipeptidase ASpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID39146425
PMCPMC11449073

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.