Evidence map›Paper›PMID 39145935›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

ATAD5 functions as a regulatory platform for Ub-PCNA deubiquitination.

Eunjin Ryu, Juyeong Yoo, Mi-Sun Kang, Na Young Ha, Yewon Jang, Jinwoo Kim, Yeongjae Kim, Byung-Gyu Kim, Shinseog Kim, Kyungjae Myung and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Ubiquitin and SUMO pathways in DNA replication and replication-coupled repair.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Eunjin Ryu *Center for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea.ORCID 0000-0003-4511-117X
Juyeong Yoo *Center for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea.ORCID 0009-0006-3992-5635
Mi-Sun Kang *Center for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea.
Na Young HaCenter for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea.
Yewon JangCenter for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea.
Jinwoo KimCenter for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea.
Yeongjae KimCenter for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea.
Byung-Gyu KimCenter for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea.ORCID 0000-0002-1152-4542
Shinseog KimCenter for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea.
Kyungjae MyungCenter for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea.ORCID 0000-0001-7975-6190
Sukhyun KangCenter for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea.ORCID 0000-0002-7567-0231

Funding

Institute for Basic Science (IBS) IBS-R022-D1National Research Foundation of Korea (NRF) NRF-2017H1A2A1044961National Research Foundation of Korea (NRF) NRF-2018H1A2A1063189Ulsan National Institute of Science and Technology (UNIST) 1.180063
6 · The paper itself

Abstract

Ubiquitination status of proliferating cell nuclear antigen (PCNA) is crucial for regulating DNA lesion bypass. After the resolution of fork stalling, PCNA is subsequently deubiquitinated, but the underlying mechanism remains undefined. We found that the N-terminal domain of ATAD5 (ATAD5-N), the largest subunit of the PCNA-unloading complex, functions as a scaffold for Ub-PCNA deubiquitination. ATAD5 recognizes DNA-loaded Ub-PCNA through distinct DNA-binding and PCNA-binding motifs. Furthermore, ATAD5 forms a heterotrimeric complex with UAF1-USP1 deubiquitinase, facilitating the deubiquitination of DNA-loaded Ub-PCNA. ATAD5 also enhances the Ub-PCNA deubiquitination by USP7 and USP11 through specific interactions. ATAD5 promotes the distinct deubiquitination process of UAF1-USP1, USP7, and USP11 for poly-Ub-PCNA. Additionally, ATAD5 mutants deficient in UAF1-binding had increased sensitivity to DNA-damaging agents. Our results ultimately reveal that ATAD5 and USPs cooperate to efficiently deubiquitinate Ub-PCNA prior to its release from the DNA in order to safely deactivate the DNA repair process.

Indexed as

ATPases Associated with Diverse Cellular ActivitiesDNA-Binding ProteinsProliferating Cell Nuclear AntigenUbiquitinationUbiquitin-Specific Peptidase 7Ubiquitin ThiolesteraseDNA DamageHumansNuclear ProteinsProtein BindingThiolester HydrolasesUbiquitinUbiquitin-Specific ProteasesATAD5 protein, humanATPases Associated with Diverse Cellular ActivitiesDNA-Binding ProteinsNuclear ProteinsPCNA protein, humanProliferating Cell Nuclear AntigenThiolester HydrolasesUbiquitinUbiquitin-Specific Peptidase 7Ubiquitin-Specific ProteasesUbiquitin ThiolesteraseUSP11 protein, humanUSP1 protein, humanUSP7 protein, humanWDR48 protein, humanATAD5-RLCde-ubiquitinationPCNAUAF1-USP1USP7-USP11

Identifiers

PMID39145935
PMCPMC11348035

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.