Evidence map›Paper›PMID 39145524›Full record

ArticleThe Plant journal : for cell and molecular biology2024

Identification of glycosyltransferases mediating 2-O-arabinopyranosyl and 2-O-galactosyl substitutions of glucuronosyl side chains of xylan.

Ruiqin Zhong, Dayong Zhou, Dennis R Phillips, Earle R Adams, Lirong Chen, John P Rose, Bi-Cheng Wang, Zheng-Hua Ye

Abstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ruiqin ZhongDepartment of Plant Biology, University of Georgia, Athens, Georgia, 30602, USA.
Dayong ZhouDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, 30602, USA.
Dennis R PhillipsDepartment of Chemistry, University of Georgia, Athens, Georgia, 30602, USA.
Earle R AdamsDepartment of Chemistry, University of Georgia, Athens, Georgia, 30602, USA.
Lirong ChenDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, 30602, USA.
John P RoseDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, 30602, USA.
Bi-Cheng WangDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, 30602, USA.
Zheng-Hua YeDepartment of Plant Biology, University of Georgia, Athens, Georgia, 30602, USA.ORCID 0000-0001-5714-744X

Funding

12 T FTICR-MS System for the Analysis of MetabolitesS10OD025118 · OD · UNIVERSITY OF GEORGIA · PI AMSTER, I JONATHAN · 2018 to 2018
$2.0M
NIH HHS S10 OD025118The U.S. Department of Energy DE-FG02-03ER15415
6 · The paper itself

Abstract

Xylan is one of the major hemicelluloses in plant cell walls and its xylosyl backbone is often decorated at O-2 with glucuronic acid (GlcA) and/or methylglucuronic acid (MeGlcA) residues. The GlcA/MeGlcA side chains may be further substituted with 2-O-arabinopyranose (Arap) or 2-O-galactopyranose (Gal) residues in some plant species, but the enzymes responsible for these substitutions remain unknown. During our endeavor to investigate the enzymatic activities of Arabidopsis MUR3-clade members of the GT47 glycosyltransferase family, we found that one of them was able to transfer Arap from UDP-Arap onto O-2 of GlcA side chains of xylan, and thus it was named xylan 2-O-arabinopyranosyltransferase 1 (AtXAPT1). The function of AtXAPT1 was verified in planta by its T-DNA knockout mutation showing a loss of the Arap substitution on xylan GlcA side chains. Further biochemical characterization of XAPT close homologs from other plant species demonstrated that while the poplar ones had the same catalytic activity as AtXAPT1, those from Eucalyptus, lemon-scented gum, sea apple, 'Ohi'a lehua, duckweed and purple yam were capable of catalyzing both 2-O-Arap and 2-O-Gal substitutions of xylan GlcA side chains albeit with differential activities. Sequential reactions with XAPTs and glucuronoxylan methyltransferase 3 (GXM3) showed that XAPTs acted poorly on MeGlcA side chains, whereas GXM3 could efficiently methylate arabinosylated or galactosylated GlcA side chains of xylan. Furthermore, molecular docking and site-directed mutagenesis analyses of Eucalyptus XAPT1 revealed critical roles of several amino acid residues at the putative active site in its activity. Together, these findings establish that XAPTs residing in the MUR3 clade of family GT47 are responsible for 2-O-arabinopyranosylation and 2-O-galactosylation of GlcA side chains of xylan.

Indexed as

ArabidopsisArabidopsis ProteinsGlycosyltransferasesXylansArabinoseCell WallArabidopsis ProteinsArabinoseGlycosyltransferasesXylansarabinopyranosyltransferasecell wallgalactosyltransferaseglucuronic acidGT47xylan

Identifiers

PMID39145524
PMCPMC11424249

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.