Evidence map›Paper›PMID 39145407›Full record

ArticleChembiochem : a European journal of chemical biology2024

A Single Interfacial Point Mutation Rescues Solution Structure Determination of the Complex of HMG-D with a DNA Bulge.

Guy R Hill, Ji-Chun Yang, Laura E Easton, Rachel Cerdan, Stephen H McLaughlin, Katherine Stott, Andrew A Travers, David Neuhaus

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Guy R HillMRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK.
Ji-Chun YangMRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK.ORCID 0000-0003-1933-5372
Laura E EastonMRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK.
Rachel CerdanLPHI, Univ. Montpellier, CNRS, Inserm, Place Eugène Bataillon, 34095, Montpellier, France.ORCID 0000-0001-8214-8006
Stephen H McLaughlinMRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK.ORCID 0000-0001-9135-6253
Katherine StottDepartment of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge, CB2 1GA, UK.ORCID 0000-0002-4014-1188
Andrew A TraversMRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK.ORCID 0000-0001-5214-7862
David NeuhausMRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK.ORCID 0000-0002-8561-7485

Funding

Medical Research Council MC_U105178783Medical Research Council MC_U105178934Medical Research Council MC_U105184288Medical Research Council U105178934
6 · The paper itself

Abstract

Broadening of signals from atoms at interfaces can often be a limiting factor in applying solution NMR to the structure determination of complexes. Common contributors to such problems include exchange between free and bound states and the increased molecular weight of complexes relative to the free components, but another cause that can be more difficult to deal with occurs when conformational dynamics within the interface takes place at an intermediate rate on the chemical shift timescale. In this work we show how a carefully chosen mutation in the protein HMG-D rescued such a situation, making possible high-resolution structure determination of its complex with a dA

Indexed as

DNAPoint MutationModels, MolecularNuclear Magnetic Resonance, BiomolecularNucleic Acid ConformationSolutionsDNASolutionsDNA recognitionHMG-box proteinNMR linewidthNMR spectroscopyProtein-DNA complex

Identifiers

PMID39145407
PMCPMC7617430

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.