Evidence map›Paper›PMID 39144719›Full record

ArticleFrontiers in genetics2024

Transcriptomic analysis for the gamma-ray-induced sweetpotato mutants with altered stem growth pattern.

Hyeong-Un Lee, Sangrea Shim, Mi Nam Chung, Taeyoung Lee, Won Park, Tae Hwa Kim, Kyo Hwui Lee, Koan Sik Woo, Sang-Sik Nam, Moon Young Kim and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Hyeong-Un LeeDepartment of Agriculture, Forestry and Bioresources and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.
Sangrea ShimDepartment of Forest Resources, College of Forest and Environmental Sciences, Kangwon National University, Chuncheon, Republic of Korea.
Mi Nam ChungBioenergy Crop Research Institute, National Institute of Crop Science, Rural Development Administration, Muan, Republic of Korea.
Taeyoung LeeBioinformatics Institute, Macrogen Inc., Seoul, Republic of Korea.
Won ParkBioenergy Crop Research Institute, National Institute of Crop Science, Rural Development Administration, Muan, Republic of Korea.
Tae Hwa KimBioenergy Crop Research Institute, National Institute of Crop Science, Rural Development Administration, Muan, Republic of Korea.
Kyo Hwui LeeBioenergy Crop Research Institute, National Institute of Crop Science, Rural Development Administration, Muan, Republic of Korea.
Koan Sik WooBioenergy Crop Research Institute, National Institute of Crop Science, Rural Development Administration, Muan, Republic of Korea.
Sang-Sik NamBioenergy Crop Research Institute, National Institute of Crop Science, Rural Development Administration, Muan, Republic of Korea.
Moon Young KimDepartment of Agriculture, Forestry and Bioresources and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.
Suk-Ha LeeDepartment of Agriculture, Forestry and Bioresources and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Sweetpotato faces breeding challenges due to physiological and genomic issues. Gamma radiation is a novel approach for inducing genetic variation in crops. We analyzed the transcriptomic changes in gamma ray-induced sweetpotato mutants with altered stem development compared with those in the wild-type 'Tongchaeru' cultivar. Methods: RNA sequencing analyses were performed to identify changes in the expression of genes related to stem development. Results: Transcriptomic analysis identified 8,931 upregulated and 6,901 downregulated genes, including the upregulation of the auxin-responsive Discussion: Our results suggest that gamma ray-induced mutations influence auxin-dependent stem development by modulating a complex regulatory network involving the expression of

Indexed as

gamma-ray-induced mutagenesishormonal signalingphytochrome interacting factor 4 (PIF4)RNA sequencingsmall auxin up RNA (SAUR)stem developmentsweetpotato

Identifiers

PMID39144719
PMCPMC11322061

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.