Evidence map›Paper›PMID 39143430›Full record

ReviewArchives of virology2024

2024 taxonomy update for the family Circoviridae.

Arvind Varsani, Balázs Harrach, Philippe Roumagnac, Mária Benkő, Mya Breitbart, Eric Delwart, Giovanni Franzo, Darius Kazlauskas, Karyna Rosario, Joaquim Segalés and 7 more

Abstract readReview
PubMed Publisher
In one paragraph

Review in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

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  18. The Journal of general virology · 2025
    Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Arvind VarsaniThe Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, 85287-5001, USA. arvind.varsani@asu.edu.ORCID http://orcid.org/0000-0003-4111-2415
Balázs HarrachHUN-REN Veterinary Medical Research Institute, Budapest, 1143, Hungary.ORCID http://orcid.org/0000-0002-1410-6469
Philippe RoumagnacCIRAD-UMR PHIM, Campus International de Baillarguet, 34398, Montpellier, France.ORCID http://orcid.org/0000-0001-5002-6039
Mária BenkőHUN-REN Veterinary Medical Research Institute, Budapest, 1143, Hungary.ORCID http://orcid.org/0000-0003-4100-0907
Mya BreitbartCollege of Marine Science, University of South Florida, Saint Petersburg, FL, 33701, USA.ORCID http://orcid.org/0000-0003-3210-2899
Eric DelwartDepartment of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94118, USA.ORCID http://orcid.org/0000-0002-6296-4484
Giovanni FranzoDepartment of Animal Medicine, Production and Health (MAPS), Università di Padova, Viale dell'Università 16, 35020, Legnaro, Italy.
Darius KazlauskasInstitute of Biotechnology, Life Sciences Center, Vilnius University, Saulėtekio av. 7, 10257, Vilnius, Lithuania.ORCID http://orcid.org/0000-0001-6135-8549
Karyna RosarioCollege of Marine Science, University of South Florida, Saint Petersburg, FL, 33701, USA.
Joaquim SegalésDepartament de Sanitat i Anatomia Animals, Facultat de Veterinària, Campus de la Universitat Autònoma de Barcelona (UAB), Bellaterra, 08193, Barcelona, Spain.ORCID http://orcid.org/0000-0002-1539-7261
Emily DunayDepartment of Pathobiological Sciences, University of Wisconsin-Madison School of Veterinary Medicine, Madison, WI, USA.
Joshua RukundoNgamba Island Chimpanzee Sanctuary/Chimpanzee Trust, Entebbe, Uganda.
Tony L GoldbergDepartment of Pathobiological Sciences, University of Wisconsin-Madison School of Veterinary Medicine, Madison, WI, USA.ORCID http://orcid.org/0000-0003-3962-4913
Enikő FehérHUN-REN Veterinary Medical Research Institute, Budapest, 1143, Hungary.ORCID http://orcid.org/0000-0001-7778-9116
Eszter KaszabHUN-REN Veterinary Medical Research Institute, Budapest, 1143, Hungary.ORCID http://orcid.org/0000-0002-5750-1872
Krisztián BányaiHUN-REN Veterinary Medical Research Institute, Budapest, 1143, Hungary.ORCID http://orcid.org/0000-0002-6270-1772
Mart KrupovicInstitut Pasteur, Université Paris Cité, Archaeal Virology Unit, 25 rue du Dr Roux, 75015, Paris, France. mart.krupovic@pasteur.fr.ORCID http://orcid.org/0000-0001-5486-0098

Funding

National Laboratory for Infectious Animal Diseases, Antimicrobial Resistance, Veterinary Public Health, and Food Chain Safety RRF-2.3.1-21-2022-00001National Laboratory of Virology RRF-2.3.1-21-2022-00010National Research, Development and Innovation Office, Hungary K146808
6 · The paper itself

Abstract

Circovirids have a circular single-stranded DNA genome packed into a small icosahedral capsid. They are classified within two genera, Circovirus and Cyclovirus, in the family Circoviridae (phylum Cressdnaviricota, class Arfiviricetes, order Cirlivirales). Over the last five years, a number of new circovirids have been identified, and, as a result, 54 new species have been created for their classification based on the previously established species demarcation criterion, namely, that viruses classified into different species share less than 80% genome-wide pairwise sequence identity. Of note, one of the newly created species includes a circovirus that was identified in human hepatocytes and suspected of causing liver damage. Furthermore, to comply with binomial species nomenclature, all new and previously recognized species have been (re)named in binomial format with a freeform epithet. Here, we provide a summary of the properties of circovirid genomes and their classification as of June 2024 (65 species in the genus Circovirus and 90 species in the genus Cyclovirus). Finally, we provide reference datasets of the nucleotide and amino acid sequences representing each of the officially recognized circovirid species to facilitate further classification of newly discovered members of the Circoviridae.

Indexed as

CircoviridaeGenome, ViralPhylogenyAnimalsDNA, ViralHumansDNA, Viral

Identifiers

PMID39143430

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.