Evidence map›Paper›PMID 39143368›Full record

ArticleCommunications biology2024

The proteomic landscape of in vitro cultured endothelial cells across vascular beds.

Stijn A Groten, Eva R Smit, Maartje van den Biggelaar, Arie J Hoogendijk

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Stijn A GrotenDepartment of Molecular Hematology, Sanquin Research, Amsterdam, The Netherlands.ORCID 0000-0002-9438-9939
Eva R SmitDepartment of Molecular Hematology, Sanquin Research, Amsterdam, The Netherlands.
Maartje van den Biggelaar *Department of Molecular Hematology, Sanquin Research, Amsterdam, The Netherlands.ORCID 0000-0001-6970-5496
Arie J Hoogendijk *Department of Molecular Hematology, Sanquin Research, Amsterdam, The Netherlands. a.hoogendijk@sanquin.nl.ORCID 0000-0002-3082-2289

Funding

Landsteiner Foundation for Blood Transfusion Research (LSBR) LSBR-1517Landsteiner Foundation for Blood Transfusion Research (LSBR) LSBR-1923
6 · The paper itself

Abstract

Blood vessel endothelial cells (EC) display heterogeneity across vascular beds, which is anticipated to drive site-specific vascular pathology. This heterogeneity is assessed using transcriptomics in vivo, and functional assays in vitro, but how proteomes compare across human in vitro cultured ECs remains incompletely characterized. We generated an in-depth human EC proteomic landscape (>8000 proteins) across six organs and two in vitro models in steady-state and upon IFNγ-induced inflammation. EC proteomes displayed a high similarity and organ-specific proteins were limited. Variation between ECs was mainly based on proliferation and differentiation processes in which Blood outgrowth endothelial cells (BOEC) and Human umbilical vein cells (HUVEC) represented the extremes of proteomic phenotypes. The IFNγ response was highly conserved across all samples. Harnessing dynamics in protein abundances we delineated VWF and VE-Cadherin correlation networks. This EC landscape provides an extensive proteomic addition in studying EC biology and heterogeneity from an in vitro perspective.

Indexed as

Endothelial CellsHuman Umbilical Vein Endothelial CellsProteomeProteomicsCells, CulturedHumansInterferon-gammaInterferon-gammaProteome

Identifiers

PMID39143368
PMCPMC11324761

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.