Evidence map›Paper›PMID 39143366›Full record

ReviewArchives of microbiology2024

Comprehensive review on Haloalkane dehalogenase (LinB): a β-hexachlorocyclohexane (HCH) degrading enzyme.

Helianthous Verma, Jasvinder Kaur, Vasundhara Thakur, Gauri Garg Dhingra, Rup Lal

Abstract readReview
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In one paragraph

Review in Archives of microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Helianthous VermaRamjas College, University of Delhi, Delhi, 110007, India.ORCID http://orcid.org/0000-0002-6149-4564
Jasvinder KaurGargi College, University of Delhi, Delhi, 110007, India.ORCID http://orcid.org/0000-0003-1163-5039
Vasundhara ThakurRamjas College, University of Delhi, Delhi, 110007, India.
Gauri Garg DhingraKirori Mal College, University of Delhi, Delhi, 110007, India.ORCID http://orcid.org/0000-0002-3419-438X
Rup LalINSA, Acharya Narendra Dev College, University of Delhi, Govindpuri, Kalkaji, New Delhi, 110019, India. ruplal@gmail.com.ORCID http://orcid.org/0000-0001-8364-8547

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Haloalkane dehalogenase, LinB, is a member of the α/β hydrolase family of enzymes. It has a wide range of halogenated substrates, but, has been mostly studied in context of degradation of hexachlorocyclohexane (HCH) isomers, especially β-HCH (5-12% of total HCH isomers), which is the most recalcitrant and persistent among all the HCH isomers. LinB was identified to directly act on β-HCH in a one or two step transformation which decreases its toxicity manifold. Thereafter, many studies focused on LinB including its structure determination using X-ray crystallographic studies, structure comparison with other haloalkane dehalogenases, substrate specificity and kinetic studies, protein engineering and site-directed mutagenesis studies in search of better catalytic activity of the enzyme. LinB was mainly identified and characterized in bacteria belonging to sphingomonads. Detailed sequence comparison of LinB from different sphingomonads further revealed the residues critical for its activity and ability to catalyze either one or two step transformation of β-HCH. Association of LinB with IS6100 elements is also being discussed in detail in sphingomonads. In this review, we summarized vigorous efforts done by different research groups on LinB for developing better bioremediation strategies against HCH contamination. Also, kinetic studies, protein engineering and site directed mutagenesis studies discussed here forms the basis of further exploration of LinB's role as an efficient enzyme in bioremediation projects.

Indexed as

HexachlorocyclohexaneHydrolasesBacterial ProteinsBiodegradation, EnvironmentalCrystallography, X-RayKineticsMutagenesis, Site-DirectedSphingomonasSubstrate SpecificityBacterial Proteinsbeta-hexachlorocyclohexanehaloalkane dehalogenaseHexachlorocyclohexaneHydrolasesCatalytic siteHaloalkane dehalogenaseHexachlorocyclohexaneLinBSphingobium

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.