Evidence map›Paper›PMID 39143239›Full record

ArticleThe EMBO journal2024

Structure and replication of Pseudomonas aeruginosa phage JBD30.

Lucie Valentová, Tibor Füzik, Jiří Nováček, Zuzana Hlavenková, Jakub Pospíšil, Pavel Plevka

Abstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Understanding phage Receptor-binding protein interaction with host surface receptor: the key for phage-Mediated detection and elimination of Pseudomonas aeruginosa.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. OvercomingAntibiotics (Basel, Switzerland) · 2025
    Review
  11. Article
  12. Viruses · 2025
    Article
  13. Article
  14. Review
  15. Article
  16. Directed evolution of bacteriophages: thwarted by prolific prophage.Applied and environmental microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lucie ValentováCentral European Institute of Technology, Masaryk University, Brno, Czech Republic.ORCID http://orcid.org/0000-0003-0160-2014
Tibor FüzikCentral European Institute of Technology, Masaryk University, Brno, Czech Republic.ORCID http://orcid.org/0000-0002-1190-0210
Jiří NováčekCentral European Institute of Technology, Masaryk University, Brno, Czech Republic.ORCID http://orcid.org/0000-0003-4013-3898
Zuzana HlavenkováCentral European Institute of Technology, Masaryk University, Brno, Czech Republic.ORCID http://orcid.org/0009-0005-3242-2237
Jakub PospíšilCentral European Institute of Technology, Masaryk University, Brno, Czech Republic.ORCID http://orcid.org/0000-0002-8679-677X
Pavel PlevkaCentral European Institute of Technology, Masaryk University, Brno, Czech Republic. pavel.plevka@ceitec.muni.cz.ORCID http://orcid.org/0000-0003-4215-3315

Funding

Brno city municipality N/AEC | European Research Council (ERC) 101043452EC | HORIZON EUROPE Framework Programme (Horizon Europe) LX22NPO5103Ministerstvo Školství, Mládeže a Tělovýchovy (MŠMT) 90254Ministerstvo Školství, Mládeže a Tělovýchovy (MŠMT) LM2023042Ministerstvo Školství, Mládeže a Tělovýchovy (MŠMT) LM2023050
6 · The paper itself

Abstract

Bacteriophages are the most abundant biological entities on Earth, but our understanding of many aspects of their lifecycles is still incomplete. Here, we have structurally analysed the infection cycle of the siphophage Casadabanvirus JBD30. Using its baseplate, JBD30 attaches to Pseudomonas aeruginosa via the bacterial type IV pilus, whose subsequent retraction brings the phage to the bacterial cell surface. Cryo-electron microscopy structures of the baseplate-pilus complex show that the tripod of baseplate receptor-binding proteins attaches to the outer bacterial membrane. The tripod and baseplate then open to release three copies of the tape-measure protein, an event that is followed by DNA ejection. JBD30 major capsid proteins assemble into procapsids, which expand by 7% in diameter upon filling with phage dsDNA. The DNA-filled heads are finally joined with 180-nm-long tails, which bend easily because flexible loops mediate contacts between the successive discs of major tail proteins. It is likely that the structural features and replication mechanisms described here are conserved among siphophages that utilize the type IV pili for initial cell attachment.

Indexed as

Cryoelectron MicroscopyPseudomonas aeruginosaPseudomonas PhagesVirus ReplicationCapsid ProteinsDNA, ViralFimbriae, BacterialSiphoviridaeCapsid ProteinsDNA, ViralCryo-EMPhagePiliPseudomonas aeruginosaStructure

Identifiers

PMID39143239
PMCPMC11445458

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.