Evidence map›Paper›PMID 39143224›Full record

ArticleNature2024

The genomic basis of childhood T-lineage acute lymphoblastic leukaemia.

Petri Pölönen, Danika Di Giacomo, Anna Eames Seffernick, Abdelrahman Elsayed, Shunsuke Kimura, Francesca Benini, Lindsey E Montefiori, Brent L Wood, Jason Xu, Changya Chen and 49 more

Registry-linked trialAbstract read
In one paragraph

Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06855810 (Chinese Children's Cancer Group T-cell Acute Lymphoblastic Leukemia -2025 Project), which is not on this map. Cited by 98 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06855810 phase2 / phase3recruitingnot on this mapstarted 2025, after this paper: background citation

Chinese Children's Cancer Group T-cell Acute Lymphoblastic Leukemia -2025 Project

TypeinterventionalSponsorInstitute of Hematology & Blood Diseases Hospital, ChinaRan2025 to 2031Enrolled610ConditionsAcute Lymphoblastic Leukemia, Childhood Leukemia, Acute Lymphoblastic, T Cell Acute Lymphoblastic Leukemia/Lymphoblastic LymphomaArmsVenetoclax, Dasatinib, homoharringtonine
3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  4. Review
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  6. Clonal selection of somatic mutations shapes NK cell memory.bioRxiv : the preprint server for biology · 2026
    Article
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38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

59 authors.

Petri PölönenDepartment of Pathology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0001-6128-9985
Danika Di Giacomo *Department of Pathology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0002-5558-7967
Anna Eames Seffernick *Department of Biostatistics, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0003-0848-4604
Abdelrahman ElsayedDepartment of Pathology, St Jude Children's Research Hospital, Memphis, TN, USA.
Shunsuke KimuraDepartment of Pathology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0002-2158-467X
Francesca BeniniDepartment of Pathology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0003-2900-6636
Lindsey E MontefioriDepartment of Pathology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0003-2342-6349
Brent L WoodChildren's Hospital Los Angeles, Laboratory Medicine, Los Angeles, CA, USA.
Jason XuPerelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Changya ChenDivision of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Zhongshan ChengCenter for Applied Bioinformatics, St Jude Children's Research Hospital, Memphis, TN, USA.
Haley NewmanDepartment of Pediatrics and the Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Jason MyersCenter for Applied Bioinformatics, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0002-0341-0860
Ilaria IacobucciDepartment of Pathology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0003-2008-1365
Elizabeth LiDivision of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Jonathan SussmanPerelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-3057-3550
Dale HedgesCenter for Applied Bioinformatics, St Jude Children's Research Hospital, Memphis, TN, USA.
Yawei HuiCenter for Applied Bioinformatics, St Jude Children's Research Hospital, Memphis, TN, USA.
Caroline DiorioPerelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Lahari UppuluriDivision of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0002-7217-892X
David FrankPerelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Yiping FanCenter for Applied Bioinformatics, St Jude Children's Research Hospital, Memphis, TN, USA.
Yunchao ChangDepartment of Pathology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0009-0005-3906-5543
Soheil MeshinchiFred Hutchinson Cancer Research Center, Clinical Research Division, Seattle, WA, USA.
Rhonda RiesFred Hutchinson Cancer Research Center, Clinical Research Division, Seattle, WA, USA.ORCID 0000-0002-3702-7923
Rawan ShraimDepartment of Pediatrics and the Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Alexander LiDivision of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Kathrin M BerntPerelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-0691-356X
Meenakshi DevidasGlobal Pediatric Medicine, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0002-1099-3478
Stuart S WinterResearch Institute and Cancer and Blood Disorders Program, Children's Minnesota, Minneapolis, MN, USA.ORCID 0000-0003-3583-7727
Kimberly P DunsmoreDivision of Oncology, University of Virginia Children's Hospital, Charlottesville, VA, USA.
Hiroto InabaDepartment of Oncology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0003-0605-7342
William L CarrollDivision of Pediatric Hematology Oncology, Department of Pediatrics, NYU Langone Health, New York, NY, USA.
Nilsa C RamirezDepartment of Pathology and Laboratory Medicine, Nationwide Children's Hospital, Columbus, OH, USA.
Aaron H PhillipsDepartment of Structural Biology, St Jude Children's Research Hospital, Memphis, TN, USA.
Richard W KriwackiDepartment of Structural Biology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0002-9798-6018
Jun J YangDepartment of Pharmaceutical Sciences, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0002-0770-9659
Tiffaney L VincentDivision of Oncology and Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Yaqi ZhaoDepartment of Pathology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0002-8230-5312
Pankaj S GhateDepartment of Pathology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0001-6678-781X
Jian WangDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, TN, USA.
Colleen ReillyDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0003-3119-9940
Xin ZhouDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0003-3979-8200
Mathijs A SandersDepartment of Hematology, Erasmus MC Cancer Institute, Rotterdam, The Netherlands.
Junko TakitaDepartment of Pediatrics, Graduate School of Medicine Kyoto University, Kyoto, Japan.
Motohiro KatoDepartment of Pediatrics, Tokyo University, Tokyo, Japan.
Nao TakasugiDepartment of Pediatrics, Tokyo University, Tokyo, Japan.
Bill H ChangDepartment of Pediatrics, Knight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.ORCID 0000-0003-3783-1820
Richard D PressDepartment of Pathology, Knight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.ORCID 0000-0002-2103-5144
Mignon LohDepartment of Pediatrics and the Ben Towne Center for Childhood Cancer Research, Seattle Children's Hospital, University of Washington, Seattle, WA, USA.ORCID 0000-0003-4099-4700
Evadnie RampersaudCenter for Applied Bioinformatics, St Jude Children's Research Hospital, Memphis, TN, USA.
Elizabeth RaetzDivision of Pediatric Hematology Oncology, Department of Pediatrics, NYU Langone Health, New York, NY, USA.
Stephen P HungerPerelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Kai TanPerelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ti-Cheng ChangCenter for Applied Bioinformatics, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0001-5302-9147
Gang WuCenter for Applied Bioinformatics, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0002-1678-5864
Stanley B PoundsDepartment of Biostatistics, St Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0002-9167-2114
Charles G MullighanDepartment of Pathology, St Jude Children's Research Hospital, Memphis, TN, USA. charles.mullighan@stjude.org.ORCID 0000-0002-1871-1850
David T TeacheyPerelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. teacheyd@chop.edu.ORCID 0000-0001-7373-8987

Funding

NCTN BIQSFP ANBL1531 (NRT)U10CA180886 · NCI · PUBLIC HEALTH INSTITUTE · PI Douglas S. Hawkins · 2014 to 2026
$390.6M
Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
COG SDMC - Statistics CoreU10CA180899 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TODD A ALONZO · 2014 to 2026
$132.8M
COG U24 Funding 2026-2027U24CA196173 · NCI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI Mignon Lee-Cheun Loh, Nilsa Del Carmen Ramirez Milan · 2015 to 2026
$62.5M
Physician Scientist Training in Clinical OncologyK12CA076931 · NCI · UNIVERSITY OF PENNSYLVANIA · PI STEPHEN Patrick HUNGER, LYNN M. SCHUCHTER · 1997 to 2026
$16.5M
Support for Human Specimen Banking in NCI-Supported Cancer Clinical TrialsU24CA114766 · NCI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI RAMIREZ MILAN, NILSA DEL CARMEN · 2005 to 2014
$14.5M
Translating genomic discoveries to improved outcomes for high risk acute leukemiaR35CA197695 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Charles G Mullighan · 2017 to 2026
$11.4M
Project 4U54CA243124 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI MULLIGHAN, CHARLES G. · 2019 to 2023
$10.5M
CANCER RESEARCH TRAINING PROGRAMT32CA009615 · NCI · UNIVERSITY OF PENNSYLVANIA · PI Gregory L Beatty, MICHAEL D HOGARTY · 1988 to 2026
$10.4M
Improving risk allocation and developing novel therapies for children with T-ALL and T-LLR01CA193776 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI Terzah M Horton, ADAM B OLSHEN · 2015 to 2026
$6.2M
Biomarkers of dasatinib response and resistance in T-cell acute lymphoblastic leukemiaR01CA264837 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI TEACHEY, DAVID T., YANG, JUN J. · 2021 to 2025
$3.0M
Childhood Hematological Malignancies Training ProgramT32CA236748 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Charles G Mullighan · 2019 to 2026
$2.0M
NCI NIH HHS F32 CA254140NCI NIH HHS K12 CA076931NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA193776NCI NIH HHS R01 CA264837NCI NIH HHS R03 CA256550NCI NIH HHS R35 CA197695NCI NIH HHS T32 CA236748NCI NIH HHS U10 CA180886NCI NIH HHS U10 CA180899NCI NIH HHS U24 CA114766NCI NIH HHS U24 CA196173NCI NIH HHS U54 CA243124NIGMS NIH HHS R01 GM115634
6 · The paper itself

Abstract

T-lineage acute lymphoblastic leukaemia (T-ALL) is a high-risk tumour

Indexed as

Genome, HumanGenomicsPrecursor T-Cell Lymphoblastic Leukemia-LymphomaChildChromatinEnhancer Elements, GeneticEpigenomicsFemaleGene Expression Regulation, LeukemicHumansMaleSingle-Cell AnalysisT-LymphocytesTranscriptomeChromatin

Identifiers

PMID39143224
PMCPMC11611067

What OpenQuestion holds

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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.