Evidence map›Paper›PMID 39143218›Full record

ArticleNature2024

Structural basis for transthiolation intermediates in the ubiquitin pathway.

Tomasz Kochańczyk, Zachary S Hann, Michaelyn C Lux, Avelyn Mae V Delos Reyes, Cheng Ji, Derek S Tan, Christopher D Lima

Abstract read
In one paragraph

Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Cell autonomous inflammation in VEXAS is mediated by cGAS-STING.bioRxiv : the preprint server for biology · 2026
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. E2 variants for probing E3 ubiquitin ligase activities.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  14. Review
  15. Article
  16. Internal Ubiquitin Electrophiles for Covalent Trapping and Inhibition of Deubiquitinases.Chembiochem : a European journal of chemical biology · 2025
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tomasz KochańczykStructural Biology Program, Sloan Kettering Institute, New York, NY, USA.ORCID 0000-0002-4989-8064
Zachary S HannStructural Biology Program, Sloan Kettering Institute, New York, NY, USA.ORCID 0000-0003-4284-5979
Michaelyn C LuxTri-Institutional PhD Program in Chemical Biology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-3001-2243
Avelyn Mae V Delos ReyesChemical Biology Program, Sloan Kettering Institute, New York, NY, USA.ORCID 0000-0002-6017-4948
Cheng JiChemical Biology Program, Sloan Kettering Institute, New York, NY, USA.
Derek S TanTri-Institutional PhD Program in Chemical Biology, Memorial Sloan Kettering Cancer Center, New York, NY, USA. tand@mskcc.org.ORCID 0000-0002-7956-9659
Christopher D LimaStructural Biology Program, Sloan Kettering Institute, New York, NY, USA. limac@mskcc.org.ORCID 0000-0002-9163-6092

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
CANCER PHARMACOLOGYT32CA062948 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LORRAINE J GUDAS · 1994 to 2026
$12.1M
Structural studies of RNA processing and ubiquitin-like protein modificationR35GM118080 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI CHRISTOPHER D. LIMA · 2016 to 2026
$5.0M
Small-Molecule Antibiotics Targeting Siderophore Biosynthesis in M. tuberculosisR01AI118224 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI QUADRI, LUIS E, TAN, DEREK S · 2016 to 2020
$3.4M
Tri-Institutional PhD Program in Chemical BiologyT32GM115327 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI TAN, DEREK S · 2015 to 2019
$741k
NCI NIH HHS P30 CA008748NCI NIH HHS T32 CA062948NIAID NIH HHS R01 AI118224NIGMS NIH HHS R35 GM118080NIGMS NIH HHS T32 GM115327
6 · The paper itself

Abstract

Transthiolation (also known as transthioesterification) reactions are used in the biosynthesis of acetyl coenzyme A, fatty acids and polyketides, and for post-translational modification by ubiquitin (Ub) and ubiquitin-like (Ubl) proteins

Indexed as

Protein Processing, Post-TranslationalSchizosaccharomyces pombe ProteinsSulfhydryl CompoundsUbiquitinUbiquitin-Activating EnzymesUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesCryoelectron MicroscopyEsterificationModels, MolecularProtein ConformationSchizosaccharomycesSchizosaccharomyces pombe ProteinsSulfhydryl CompoundsUbiquitinUbiquitin-Activating EnzymesUbiquitin-Conjugating EnzymesUbiquitin-Protein Ligases

Identifiers

PMID39143218
PMCPMC11374688

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.