Evidence map›Paper›PMID 39141295›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Use of Synchrotron Radiation Circular Dichroism to Analyze the Interaction and Insertion of Proteins into Bacterial Outer Membrane Vesicles.

Florian Turbant, Anais Blache, Grzegorz Węgrzyn, Wafa Achouak, Frank Wien, Véronique Arluison

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Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Florian TurbantLaboratoire Léon Brillouin LLB, UMR12 CEA/CNRS, CEA Saclay, Gif-sur-Yvette, France.
Anais BlacheLab of Microbial Ecology of the Rhizosphere, (LEMiRE), Aix Marseille University, CEA, CNRS, BIAM, Saint Paul Lez Durance, France.
Grzegorz WęgrzynDepartment of Molecular Biology, University of Gdansk, Gdansk, Poland.
Wafa AchouakLab of Microbial Ecology of the Rhizosphere, (LEMiRE), Aix Marseille University, CEA, CNRS, BIAM, Saint Paul Lez Durance, France.
Frank WienSynchrotron SOLEIL, L'Orme des Merisiers, Saint Aubin BP48, Gif-sur-Yvette, France.
Véronique ArluisonLaboratoire Léon Brillouin LLB, UMR12 CEA/CNRS, CEA Saclay, Gif-sur-Yvette, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Circular dichroism (CD) is a spectroscopic technique commonly used for the analysis of proteins. Particularly, it allows the determination of protein secondary structure content in various media, including the membrane environment. In this chapter, we present how CD applications can be used to analyze the interaction of proteins with bacterial outer membrane vesicles (OMVs). Most CD studies characterizing the structure of proteins inserted into membranes rely on artificial lipid bilayers, mimicking natural membranes. Nevertheless, these artificial models lack the important features of the true membrane, especially for the outer membrane of Gram-negative bacteria. These features include lipid diversity, glycosylation, and asymmetry. Here, we show how to analyze the interactions of proteins, either integral or peripheral, with OMVs in solution and with supported membranes of OMVs, using conventional CD and orientated circular dichroism (OCD). We explain how to decipher the spectroscopic signals to obtain information on the molecular structure of the protein upon its interaction with an OMV and through its potential insertion into an OMV membrane.

Indexed as

Bacterial Outer Membrane ProteinsCircular DichroismSynchrotronsBacterial Outer MembraneLipid BilayersProtein Structure, SecondaryBacterial Outer Membrane ProteinsLipid BilayersAmyloidGram-negative bacteriaMembrane protein insertionOMV: protein interactionOuter membrane

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.