Evidence map›Paper›PMID 39141127›Full record

ArticleThe Journal of experimental medicine2024

Transcription of HIV-1 at sites of intact latent provirus integration.

Ana Rafaela Teixeira, Cintia Bittar, Gabriela S Silva Santos, Thiago Y Oliveira, Amy S Huang, Noemi Linden, Isabella A T M Ferreira, Tetyana Murdza, Frauke Muecksch, R Brad Jones and 3 more

Erratum issuedAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Antiviral Potential ofBiomedicines · 2026
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Viral and immune predictors of HIV posttreatment control.Current opinion in HIV and AIDS · 2025
    Review
  19. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Ana Rafaela TeixeiraLaboratory of Molecular Immunology, The Rockefeller University, New York, NY, USA.ORCID 0000-0003-1906-0102
Cintia BittarLaboratory of Molecular Immunology, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-2048-4589
Gabriela S Silva SantosLaboratory of Molecular Immunology, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-7482-7380
Thiago Y OliveiraLaboratory of Molecular Immunology, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-2654-0879
Amy S HuangTessera Therapeutics , Somerville, MA, USA.ORCID 0000-0002-5303-2191
Noemi LindenDivision of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, NY, USA.ORCID 0000-0001-5035-6716
Isabella A T M FerreiraDivision of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, NY, USA.ORCID 0000-0001-5232-4670
Tetyana MurdzaDepartment of Infectious Diseases, Medical Faculty Heidelberg, Virology, Center for Integrative Infectious Disease Research (CIID), Heidelberg University, Heidelberg, Germany.ORCID 0000-0003-1800-1784
Frauke MueckschDepartment of Infectious Diseases, Medical Faculty Heidelberg, Virology, Center for Integrative Infectious Disease Research (CIID), Heidelberg University, Heidelberg, Germany.ORCID 0000-0002-0132-5101
R Brad JonesDivision of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, NY, USA.ORCID 0000-0003-4470-1231
Marina CaskeyLaboratory of Molecular Immunology, The Rockefeller University, New York, NY, USA.ORCID 0000-0003-1727-8693
Mila Jankovic *Laboratory of Molecular Immunology, The Rockefeller University, New York, NY, USA.ORCID 0000-0001-9696-5234
Michel C Nussenzweig *Laboratory of Molecular Immunology, The Rockefeller University, New York, NY, USA.ORCID 0000-0003-0592-8564

Funding

Identification of neutralizing epitopes on SARS-CoV-2 spike for design of vaccines and small-molecule antiviralsUM1AI144462 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI BURTON, DENNIS R. · 2019 to 2025
$201.6M
Support Component D/Vaccine Discovery, Concept to ClinicUM1AI100663 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI BURTON, DENNIS R. · 2012 to 2018
$131.5M
Stuctural basis of bNab activityP01AI100148 · NIAID · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI Pamela J Bjorkman · 2013 to 2026
$43.3M
BEAT-HIV: Delaney Collaboratory to Cure HIV-1 Infection by Combination ImmunotherapyUM1AI164570 · NIAID · WISTAR INSTITUTE · PI Luis J Montaner, James L. Riley · 2021 to 2026
$34.7M
REACH: Research Enterprise to Advance a Cure for HIVUM1AI164565 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI Marina Caskey, R. Brad Jones · 2021 to 2026
$32.9M
Patient and Population Health Outcomes Research SWGP30AI124414 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI Vinayaka R. Prasad · 2017 to 2026
$28.3M
First-in-human study of two anti-SARS CoV-2 antibodies in health volunteersUM1AI126620 · NIAID · WISTAR INSTITUTE · PI MONTANER, LUIS J, RILEY, JAMES L. · 2016 to 2021
$24.5M
Optimization of Fc effector activity of anti-HIV antibodies to target HIV reservoirR01AI129795 · NIAID · ROCKEFELLER UNIVERSITY · PI NUSSENZWEIG, MICHEL C, RAVETCH, JEFFREY VICTOR · 2017 to 2021
$4.2M
Einstein-Rockefeller-CUNY Center for AIDS Research 1P30AI124414-01A1NIAID NIH HHS P01 AI100148NIAID NIH HHS P30 AI124414NIAID NIH HHS R01 AI129795NIAID NIH HHS UM1 AI100663NIAID NIH HHS UM1 AI126620NIAID NIH HHS UM1 AI144462NIAID NIH HHS UM1 AI164565NIAID NIH HHS UM1 AI164570NIH HHS UM1 AI100663Rockefeller UniversityStavros Niarchos Foundation
6 · The paper itself

Abstract

HIV-1 antiretroviral therapy is highly effective but fails to eliminate a reservoir of latent proviruses, leading to a requirement for life-long treatment. How the site of integration of authentic intact latent proviruses might impact their own or neighboring gene expression or reservoir dynamics is poorly understood. Here, we report on proviral and neighboring gene transcription at sites of intact latent HIV-1 integration in cultured T cells obtained directly from people living with HIV, as well as engineered primary T cells and cell lines. Proviral gene expression was correlated to the level of endogenous gene expression under resting but not activated conditions. Notably, latent proviral promoters were 100-10,000× less active than in productively infected cells and had little or no measurable impact on neighboring gene expression under resting or activated conditions. Thus, the site of integration has a dominant effect on the transcriptional activity of intact HIV-1 proviruses in the latent reservoir, thereby influencing cytopathic effects and proviral immune evasion.

Indexed as

HIV-1HIV InfectionsProvirusesTranscription, GeneticVirus IntegrationVirus LatencyCD4-Positive T-LymphocytesCell LineGene Expression Regulation, ViralHumansPromoter Regions, GeneticT-Lymphocytes

Identifiers

PMID39141127
PMCPMC11323366

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.