Evidence map›Paper›PMID 39140970›Full record

ArticlePlant physiology2024

Temporal and spatial frameworks supporting plant responses to vegetation proximity.

Pedro Pastor-Andreu, Jordi Moreno-Romero, Mikel Urdin-Bravo, Julia Palau-Rodriguez, Sandi Paulisic, Elizabeth Kastanaki, Vicente Vives-Peris, Aurelio Gomez-Cadenas, Anna Esteve-Codina, Beatriz Martín-Mur and 2 more

Abstract read
In one paragraph

Article in Plant physiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Pedro Pastor-AndreuCentre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Barcelona 08193, Spain.ORCID 0000-0001-6320-0569
Jordi Moreno-RomeroCentre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Barcelona 08193, Spain.ORCID 0000-0002-7352-1507
Mikel Urdin-BravoInstitute for Plant Molecular and Cell Biology (IBMCP), CSIC-UPV, València 46022, Spain.ORCID 0000-0003-3839-3981
Julia Palau-RodriguezInstitute for Plant Molecular and Cell Biology (IBMCP), CSIC-UPV, València 46022, Spain.
Sandi PaulisicCentre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Barcelona 08193, Spain.ORCID 0000-0003-4696-5134
Elizabeth KastanakiGroup of Plant Vascular Development, Swiss Federal Institute of Technology (ETH) Zurich, Zurich CH-8092, Switzerland.
Vicente Vives-PerisDepartament de Biologia, Bioquimica I Ciències Naturals, Universitat Jaume I, Castelló de la Plana 12071, Spain.ORCID 0000-0002-9882-7297
Aurelio Gomez-CadenasDepartament de Biologia, Bioquimica I Ciències Naturals, Universitat Jaume I, Castelló de la Plana 12071, Spain.ORCID 0000-0002-4598-2664
Anna Esteve-CodinaFunctional Genomics Team, Centro Nacional de Análisis Genómico (CNAG), Universitat de Barcelona, Barcelona 08028, Spain.
Beatriz Martín-MurFunctional Genomics Team, Centro Nacional de Análisis Genómico (CNAG), Universitat de Barcelona, Barcelona 08028, Spain.
Antía Rodríguez-VillalónGroup of Plant Vascular Development, Swiss Federal Institute of Technology (ETH) Zurich, Zurich CH-8092, Switzerland.
Jaume F Martínez-GarcíaCentre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Barcelona 08193, Spain.ORCID 0000-0003-1516-0341

Funding

Agencia Estatal de Investigación PRE2021-099195EMBO ShortTermEuropean Union's Horizon 2020 H2020-MSCA-IF-2017Generalitat Valenciana PCI2021-121941Spanish Ministerio de Universidades FPU20/05486
6 · The paper itself

Abstract

After the perception of vegetation proximity by phytochrome photoreceptors, shade-avoider plants initiate a set of responses known as the shade avoidance syndrome (SAS). Shade perception by the phytochrome B (phyB) photoreceptor unleashes the PHYTOCHROME INTERACTING FACTORs and initiates SAS responses. In Arabidopsis (Arabidopsis thaliana) seedlings, shade perception involves rapid and massive changes in gene expression, increases auxin production, and promotes hypocotyl elongation. Other components, such as phyA and ELONGATED HYPOCOTYL 5, also participate in the shade regulation of the hypocotyl elongation response by repressing it. However, why and how so many regulators with either positive or negative activities modulate the same response remains unclear. Our physiological, genetic, cellular, and transcriptomic analyses showed that (i) these components are organized into 2 main branches or modules and (ii) the connection between them is dynamic and changes with the time of shade exposure. We propose a model for the regulation of shade-induced hypocotyl elongation in which the temporal and spatial functional importance of the various SAS regulators analyzed here helps to explain the coexistence of differentiated regulatory branches with overlapping activities.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantHypocotylPhytochrome BLightArabidopsis ProteinsPhytochrome B

Identifiers

PMID39140970
PMCPMC11531833

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.