Evidence map›Paper›PMID 39140134›Full record

ArticleJournal of cell science2024

Hominini-specific regulation of the cell cycle by stop codon readthrough of FEM1B.

Md Noor Akhtar, Anumeha Singh, Lekha E Manjunath, Dhruba Dey, Sangeetha Devi Kumar, Kirtana Vasu, Arpan Das, Sandeep M Eswarappa

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Article in Journal of cell science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Md Noor AkhtarDepartment of Biochemistry, Indian Institute of Science, Bengaluru 560012, India.
Anumeha SinghDepartment of Biochemistry, Indian Institute of Science, Bengaluru 560012, India.
Lekha E ManjunathDepartment of Biochemistry, Indian Institute of Science, Bengaluru 560012, India.
Dhruba DeyUndergraduate Program, Indian Institute of Science, Bengaluru 560012, India.
Sangeetha Devi KumarDepartment of Biochemistry, Indian Institute of Science, Bengaluru 560012, India.
Kirtana VasuDepartment of Biochemistry, Indian Institute of Science, Bengaluru 560012, India.
Arpan DasUndergraduate Program, Indian Institute of Science, Bengaluru 560012, India.
Sandeep M EswarappaDepartment of Biochemistry, Indian Institute of Science, Bengaluru 560012, India.ORCID 0000-0002-7903-5198

Funding

Department of Biotechnology, Ministry of Science and Technology, India BT/PR38405/GET/119/309/2020Department of Science and Technology DST/SJF/LSA-04/2019-20EMBOEuropean Molecular Biology Organization FA/EMBO-22-0001Indian Institute of ScienceMinistry of Education, IndiaMinistry of Education, India STARS/APR2019/BS/328/FSScience and Engineering Research Board DST/SJF/LSA-04/2019-20Science and Engineering Research Board STARS/APR2019/BS/328/FSWellcome Trust DBT India Alliance IA/I/15/1/501833
6 · The paper itself

Abstract

FEM1B is a substrate-recognition component of the CRL2 E3 ubiquitin-protein ligase. This multi-protein complex targets specific proteins for ubiquitylation, which leads to their degradation. Here, we demonstrate the regulation of FEM1B expression by stop codon readthrough (SCR). In this process, translating ribosomes readthrough the stop codon of FEM1B to generate a C-terminally extended isoform that is highly unstable. A total of 81 nucleotides in the proximal 3'UTR of FEM1B constitute the necessary and sufficient cis-signal for SCR. Also, they encode the amino acid sequence responsible for the degradation of the SCR product. CRISPR-edited cells lacking this region, and therefore SCR of FEM1B, showed increased FEM1B expression. This in turn resulted in reduced expression of SLBP (a target of FEM1B-mediated degradation) and replication-dependent histones (target of SLBP for mRNA stability), causing cell cycle delay. Evolutionary analysis revealed that this phenomenon is specific to the genus Pan and Homo (Hominini). Overall, we show a relatively recently evolved SCR process that relieves the cell cycle from the negative regulation by FEM1B.

Indexed as

Cell CycleCell Cycle ProteinsCodon, Terminator3' Untranslated RegionsAnimalsHEK293 CellsHistonesHumansmRNA Cleavage and Polyadenylation FactorsNuclear ProteinsProtein BiosynthesisRNA, Messenger3' Untranslated RegionsCell Cycle ProteinsCodon, TerminatorHistonesmRNA Cleavage and Polyadenylation FactorsNuclear ProteinsRNA, MessengerSLBP protein, humanCell cycleFEM1Bstop codonTranslational readthrough

Identifiers

PMID39140134
PMCPMC11385324

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.