Evidence map›Paper›PMID 39140048›Full record

ArticleACS medicinal chemistry letters2024

Machine Learning ADME Models in Practice: Four Guidelines from a Successful Lead Optimization Case Study.

Alexander S Rich, Yvonne H Chan, Benjamin Birnbaum, Kamran Haider, Joshua Haimson, Michael Hale, Yongxin Han, William Hickman, Klaus P Hoeflich, Daniel Ortwine and 2 more

Abstract read
In one paragraph

Article in ACS medicinal chemistry letters, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Soft drugs: design principles and topical applications.Nature reviews. Drug discovery · 2026
    Review
  2. Is AI Capable of Real-World Drug Discovery?Journal of chemical information and modeling · 2026
    Article
  3. Article
  4. Computational approaches for toxicology and Pharmacokinetic properties prediction.Journal of pharmacokinetics and pharmacodynamics · 2025
    Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Alexander S RichInductive Bio, Inc., 550 Vanderbilt Ave, #730, Brooklyn, New York 11238, United States.
Yvonne H ChanNested Therapeutics, 1030 Mass Ave, Suite 410, Cambridge, Massachusetts 02138, United States.ORCID https://orcid.org/0000-0002-3422-8164
Benjamin BirnbaumInductive Bio, Inc., 550 Vanderbilt Ave, #730, Brooklyn, New York 11238, United States.
Kamran HaiderNested Therapeutics, 1030 Mass Ave, Suite 410, Cambridge, Massachusetts 02138, United States.
Joshua HaimsonInductive Bio, Inc., 550 Vanderbilt Ave, #730, Brooklyn, New York 11238, United States.
Michael HaleNested Therapeutics, 1030 Mass Ave, Suite 410, Cambridge, Massachusetts 02138, United States.
Yongxin HanNested Therapeutics, 1030 Mass Ave, Suite 410, Cambridge, Massachusetts 02138, United States.
William HickmanInductive Bio, Inc., 550 Vanderbilt Ave, #730, Brooklyn, New York 11238, United States.
Klaus P HoeflichNested Therapeutics, 1030 Mass Ave, Suite 410, Cambridge, Massachusetts 02138, United States.
Daniel OrtwineNested Therapeutics, 1030 Mass Ave, Suite 410, Cambridge, Massachusetts 02138, United States.
Ayşegül ÖzenNested Therapeutics, 1030 Mass Ave, Suite 410, Cambridge, Massachusetts 02138, United States.
David B BelangerNested Therapeutics, 1030 Mass Ave, Suite 410, Cambridge, Massachusetts 02138, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Optimization of the ADME properties and pharmacokinetic (PK) profile of compounds is one of the critical activities in any medicinal chemistry campaign to discover a future clinical candidate. Finding ways to expedite the process to address ADME/PK shortcomings and reduce the number of compounds to synthesize is highly valuable. This article provides practical guidelines and a case study on the use of ML ADME models to guide compound design in small molecule lead optimization. These guidelines highlight that ML models cannot have an impact in a vacuum: they help advance a program when they have the trust of users, are tuned to the needs of the program, and are integrated into decision-making processes in a way that complements and augments the expertise of chemists.

Identifiers

PMID39140048
PMCPMC11318014

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.