Evidence map›Paper›PMID 39139080›Full record

ArticleEpidemiology and health2024

Genetic associations and parent-of-origin effects of PVRL1 in non-syndromic cleft lip with or without cleft palate across multiple ethnic populations.

Ji Wan Park, Geon Kang, Seung-Hak Baek, Young Ho Kim

Abstract read
In one paragraph

Article in Epidemiology and health, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Rare missense variants inFrontiers in genetics · 2026
    Article
  2. Oral and Craniofacial Development and Immunology.Advances in experimental medicine and biology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ji Wan ParkDepartment of Medical Genetics, Hallym University College of Medicine, Chuncheon, Korea.
Geon KangDepartment of Medical Genetics, Hallym University College of Medicine, Chuncheon, Korea.
Seung-Hak BaekDepartment of Orthodontics, Seoul National University School of Dentistry, Seoul, Korea.
Young Ho KimDepartment of Orthodontics, Institute of Oral Health Science, Ajou University School of Medicine, Suwon, Korea.

Funding

Extending the Phenotype of Nonsyndromic Orofacial CleftsR01DE016148 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L., WEINBERG, SETH M · 2004 to 2018
$19.7M
PHENOTYPE AND GENETICS IN OROFACIAL CLEFT FAMILIESP50DE016215 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2004 to 2008
$10.1M
Molecular Genetic Epidemiology of Cleft Lip and PalateR37DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2004 to 2013
$6.8M
Cleft Lip Genetics: A Multi Center International ConsortiumR01DE014667 · NIDCR · UNIVERSITY OF IOWA · PI LIDRAL, ANDREW C · 2001 to 2009
$4.2M
Health outcomes and improved phenotypic characterization of cleft lip and palateR01DD000295 · DD · UNIVERSITY OF IOWA · PI WEHBY, GEORGE L · 2007 to 2009
$1.4M
GENETIC MAPPING STUDIES OF ORAL-FACIAL CLEFTS IN CHINAR01DE009886 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI MARAZITA, MARY L · 1992 to 2002
$1.0M
Genetic studies of nonsyndromic clefts in populations of African Descent.K99DE022378 · NIDCR · UNIVERSITY OF IOWA · PI BUTALI, AZEEZ · 2012 to 2013
$252k
NCBDD CDC HHS R01 DD000295NHLBI NIH HHS HHSN268201200008CNHLBI NIH HHS HHSN268201200008INIDCR NIH HHS K99 DE022378NIDCR NIH HHS P50 DE016215NIDCR NIH HHS R01 DE009886NIDCR NIH HHS R01 DE014667NIDCR NIH HHS R01 DE016148NIDCR NIH HHS R37 DE008559
6 · The paper itself

Abstract

objectivesThis study investigated the associations of PVRL1 gene variants with non-syndromic cleft lip with or without cleft palate (NSCL/P) by evaluating transmission distortion and parent-of-origin (POO) effects in multiple ethnic populations.

methodsWe conducted allelic and genotypic transmission disequilibrium tests (TDT) on 10 single-nucleotide variants (SNVs) in PVRL1 using data from 142 Korean families with an affected child. POO effects were analyzed using the POO likelihood ratio test, comparing transmission rates of maternally and paternally inherited alleles. To assess generalizability and ethnic heterogeneity, we compared results from Korean families with data from the Center for Craniofacial and Dental Genetics, which included 2,226 individuals from 497 European and 245 Asian trios.

resultsTDT analysis identified significant over-transmission of the rs7940667 (G361V) C allele in Korean families (p=0.007), a finding replicated in both Asian (p=6.5×10-7) and European families (p=1.6×10-10). Eight SNVs showed strong TDT evidence in larger Asian and European datasets after multiple comparison corrections (p<0.0073). Of these, 4 SNVs (rs7940667, rs7103685, rs7129848, and rs4409845) showed particularly robust association (p<5×10-8). POO analysis revealed significant maternal over-transmission of the rs10790330-A allele in Korean families (p=0.044). This finding was replicated in European families (p=9.0×10-4). Additionally, 3 other SNVs, rs7129848 (p=0.001) and the linked SNVs rs3935406 and rs10892434 (p=0.025), exhibited maternal over-transmission in the validation datasets.

conclusionsOur findings provide robust evidence supporting the associations of PVRL1 variants with NSCL/P susceptibility. Further research is necessary to explore the potential clinical applications of these findings.

Indexed as

Cleft LipCleft PalateNectinsEast Asian PeopleFemaleGenetic Predisposition to DiseaseGenotypeHumansLinkage DisequilibriumMalePolymorphism, Single NucleotideRepublic of KoreaWhite PeopleNECTIN1 protein, humanNectinsCase-parent trio designHuman poliovirus receptor related 1Nonsyndromic cleft lip with or without cleft palateParent-of-origin effectTransmission disequilibrium test

Identifiers

PMID39139080
PMCPMC11576525

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.