Evidence map›Paper›PMID 39138174›Full record

ArticleNature communications2024

PTPN2 copper-sensing relays copper level fluctuations into EGFR/CREB activation and associated CTR1 transcriptional repression.

Matthew O Ross, Yuan Xie, Ryan C Owyang, Chang Ye, Olivia N P Zbihley, Ruitu Lyu, Tong Wu, Pingluan Wang, Olga Karginova, Olufunmilayo I Olopade and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
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  4. Analysis of Migration and Adaptive Evolution in Tibetan Sheep Populations.Animals : an open access journal from MDPI · 2026
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Matthew O RossDepartment of Chemistry, University of Chicago, Chicago, IL, USA. matthewross@uchicago.edu.ORCID 0000-0003-2115-9806
Yuan XieDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.ORCID 0000-0001-5105-7136
Ryan C OwyangDepartment of Chemistry, University of Chicago, Chicago, IL, USA.ORCID 0000-0003-0532-5915
Chang YeDepartment of Chemistry, University of Chicago, Chicago, IL, USA.ORCID 0000-0003-0236-5671
Olivia N P ZbihleyDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.ORCID 0000-0003-1887-4112
Ruitu LyuDepartment of Chemistry, University of Chicago, Chicago, IL, USA.ORCID 0000-0003-4597-1604
Tong WuDepartment of Chemistry, University of Chicago, Chicago, IL, USA.ORCID 0000-0001-9968-9909
Pingluan WangDepartment of Chemistry, University of Chicago, Chicago, IL, USA.
Olga KarginovaDepartment of Medicine, Center for Clinical Cancer Genetics and Global Health, University of Chicago, Chicago, IL, USA.
Olufunmilayo I OlopadeDepartment of Medicine, Center for Clinical Cancer Genetics and Global Health, University of Chicago, Chicago, IL, USA.ORCID 0000-0002-9936-1599
Minglei ZhaoDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.ORCID 0000-0001-5832-6060
Chuan HeDepartment of Chemistry, University of Chicago, Chicago, IL, USA. chuanhe@uchicago.edu.ORCID 0000-0003-4319-7424

Funding

Labeling and sequencing of 5hmC and 5mC in DNA-RenewalR01HG006827 · NHGRI · UNIVERSITY OF CHICAGO · PI HE, CHUAN · 2012 to 2025
$7.2M
Structural and Functional Studies of Molecular Machines Involved in Chemical Modifications of MacromoleculesR35GM143052 · NIGMS · UNIVERSITY OF CHICAGO · PI ZHAO, MINGLEI · 2021 to 2025
$2.1M
Direct Oxidative Nucleic Acids DemethylationR01ES030546 · NIEHS · UNIVERSITY OF CHICAGO · PI HE, CHUAN · 2019 to 2023
$1.9M
Heavy metal-stimulated signal transduction: new metal-regulatory and -responsive mechanismsK99ES034084 · NIEHS · UNIVERSITY OF CHICAGO · PI ROSS, MATTHEW OLIVER · 2023 to 2023
$88k
Breast Cancer Research Foundation (BCRF) FP049439NHGRI NIH HHS R01 HG006827NIEHS NIH HHS K99 ES034084NIEHS NIH HHS R01 ES030546NIGMS NIH HHS R35 GM143052U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) HG006827U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) K99ES034084U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) R01ES030546
6 · The paper itself

Abstract

Fluxes in human copper levels recently garnered attention for roles in cellular signaling, including affecting levels of the signaling molecule cyclic adenosine monophosphate. We herein apply an unbiased temporal evaluation of the signaling and whole genome transcriptional activities modulated by copper level fluctuations to identify potential copper sensor proteins responsible for driving these activities. We find that fluctuations in physiologically relevant copper levels modulate EGFR signal transduction and activation of the transcription factor CREB. Both intracellular and extracellular assays support Cu

Indexed as

CopperCopper Transporter 1Cyclic AMP Response Element-Binding ProteinErbB ReceptorsProtein Tyrosine Phosphatase, Non-Receptor Type 2Signal TransductionHumansProtein Tyrosine Phosphatase, Non-Receptor Type 1Transcription, GeneticCopperCopper Transporter 1CREB1 protein, humanCyclic AMP Response Element-Binding ProteinEGFR protein, humanErbB ReceptorsProtein Tyrosine Phosphatase, Non-Receptor Type 1Protein Tyrosine Phosphatase, Non-Receptor Type 2PTPN1 protein, humanPTPN2 protein, humanSLC31A1 protein, human

Identifiers

PMID39138174
PMCPMC11322707

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.