Evidence map›Paper›PMID 39138169›Full record

ArticleNature communications2024

RNA interactome of hypervirulent Klebsiella pneumoniae reveals a small RNA inhibitor of capsular mucoviscosity and virulence.

Kejing Wu, Xingyu Lin, Yujie Lu, Rui Dong, Hongnian Jiang, Sarah L Svensson, Jiajia Zheng, Ning Shen, Andrew Camilli, Yanjie Chao

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Hypermucoviscosity inJournal of bacteriology · 2026
    Review
  5. Article
  6. Sedative choice altersInfection and immunity · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. The small non-coding RNA sRNA102 regulatesFrontiers in cellular and infection microbiology · 2026
    Article
  13. Review
  14. Article
  15. Tea-Residue-DerivedBiomolecules · 2025
    Article
  16. Sugar Import SuppressesbioRxiv : the preprint server for biology · 2025
    Article
  17. Article
  18. Review
  19. Article
  20. O-antigen polysaccharides inMicrobiology and molecular biology reviews : MMBR · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Kejing Wu *Microbial RNA Systems Biology Unit, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China.ORCID 0009-0009-5174-9613
Xingyu Lin *Microbial RNA Systems Biology Unit, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China.
Yujie Lu *Microbial RNA Systems Biology Unit, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China.
Rui DongMicrobial RNA Systems Biology Unit, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China.
Hongnian JiangMicrobial RNA Systems Biology Unit, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China.
Sarah L SvenssonMicrobial RNA Systems Biology Unit, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China.ORCID 0000-0002-3183-6084
Jiajia ZhengCenter of Infectious Disease, Peking University Third Hospital, Beijing, China.ORCID 0000-0003-3939-9875
Ning ShenCenter of Infectious Disease, Peking University Third Hospital, Beijing, China.
Andrew CamilliDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, USA.
Yanjie ChaoMicrobial RNA Systems Biology Unit, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China. yjchao@ips.ac.cn.ORCID 0000-0002-5735-7954

Funding

Chinese Academy of Sciences (CAS) XDB0570000Ministry of Science and Technology of the People's Republic of China (Chinese Ministry of Science and Technology) 2022YFE0111800National Natural Science Foundation of China (National Science Foundation of China) 32270064
6 · The paper itself

Abstract

Hypervirulent Klebsiella pneumoniae (HvKP) is an emerging bacterial pathogen causing invasive infection in immune-competent humans. The hypervirulence is strongly linked to the overproduction of hypermucoviscous capsule, but the underlying regulatory mechanisms of hypermucoviscosity (HMV) have been elusive, especially at the post-transcriptional level mediated by small noncoding RNAs (sRNAs). Using a recently developed RNA interactome profiling approach iRIL-seq, we interrogate the Hfq-associated sRNA regulatory network and establish an intracellular RNA-RNA interactome in HvKP. Our data reveal numerous interactions between sRNAs and HMV-related mRNAs, and identify a plethora of sRNAs that repress or promote HMV. One of the strongest HMV repressors is ArcZ, which is activated by the catabolite regulator CRP and targets many HMV-related genes including mlaA and fbp. We discover that MlaA and its function in phospholipid transport is crucial for capsule retention and HMV, inactivation of which abolishes Klebsiella virulence in mice. ArcZ overexpression drastically reduces bacterial burden in mice and reduces HMV in multiple hypervirulent and carbapenem-resistant clinical isolates, indicating ArcZ is a potent RNA inhibitor of bacterial pneumonia with therapeutic potential. Our work unravels a novel CRP-ArcZ-MlaA regulatory circuit of HMV and provides mechanistic insights into the posttranscriptional virulence control in a superbug of global concern.

Indexed as

Bacterial CapsulesBacterial ProteinsGene Expression Regulation, BacterialKlebsiella InfectionsKlebsiella pneumoniaeRNA, BacterialRNA, Small UntranslatedAnimalsFemaleHost Factor 1 ProteinHumansMiceVirulenceBacterial ProteinsHost Factor 1 ProteinRNA, BacterialRNA, Small Untranslated

Identifiers

PMID39138169
PMCPMC11322559

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.