Evidence map›Paper›PMID 39137200›Full record

ArticlePLoS pathogens2024

A small protein encoded by PCBP1-AS1 is identified as a key regulator of influenza virus replication via enhancing autophagy.

Xiaojuan Chi, Guiying Huang, Liwei Wang, Xinge Zhang, Jiayin Liu, Zhihui Yin, Guijie Guo, Yuhai Chen, Song Wang, Ji-Long Chen

Abstract read
In one paragraph

Article in PLoS pathogens, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

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  14. Cysteine reactivity profiling identifies host regulators ofbioRxiv : the preprint server for biology · 2025
    Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. The regulatory roles of STAT3 protein in the pathogenesis of viral infections.Frontiers in cellular and infection microbiology · 2025
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Xiaojuan ChiFujian Agriculture and Forestry University, Fuzhou, China.
Guiying HuangFujian Agriculture and Forestry University, Fuzhou, China.
Liwei WangFujian Agriculture and Forestry University, Fuzhou, China.
Xinge ZhangFujian Agriculture and Forestry University, Fuzhou, China.
Jiayin LiuFujian Agriculture and Forestry University, Fuzhou, China.
Zhihui YinFujian Agriculture and Forestry University, Fuzhou, China.
Guijie GuoFujian Agriculture and Forestry University, Fuzhou, China.
Yuhai ChenCAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.
Song WangFujian Agriculture and Forestry University, Fuzhou, China.
Ji-Long ChenFujian Agriculture and Forestry University, Fuzhou, China.ORCID 0000-0002-4274-0563

Funding

National Key Research and Development Program of China 2021YFD1800205Natural Science Foundation of China 32030110Natural Science Foundation of China U23A20235Science and Technology Innovation Project of Fujian Agriculture and Forestry University KFB22063XA
6 · The paper itself

Abstract

Many annotated long noncoding RNAs (lncRNAs) contain small open reading frames (sORFs), some of which have been demonstrated to encode small proteins or micropeptides with fundamental biological importance. However, functions of lncRNAs-encoded small proteins or micropeptides in viral pathogenesis remain largely unexplored. Here, we identified a 110-amino acid small protein as a key regulator of influenza A virus (IAV) replication. This small protein that we call PESP was encoded by the putative lncRNA PCBP1-AS1. It was observed that both PCBP1-AS1 and PESP were significantly upregulated by IAV infection. Furthermore, they were markedly induced by treatment with either type I or type III interferon. Overexpression of either PCBP1-AS1 or PESP alone significantly enhanced IAV replication. In contrast, shRNA-mediated knockdown of PCBP1-AS1 or CRISPR/Cas9-mediated knockout of PESP markedly inhibited the viral production. Moreover, the targeted deletion or mutation of the sORF within the PCBP1-AS1 transcript, which resulted in the disruption of PESP expression, significantly diminished the capacity of PCBP1-AS1 to enhance IAV replication, underscoring the indispensable role of PESP in the facilitation of IAV replication by PCBP1-AS1. Interestingly, overexpression of PESP enhanced the IAV-induced autophagy by increasing the expression of ATG7, an essential autophagy effector enzyme. We also found that the 7-22 amino acids at the N-terminus of PESP were crucial for its functionality in modulating ATG7 expression and action as an enhancer of IAV replication. Additionally, HSP90AA1, a protein identified previously as a facilitator of autophagy, was found to interact with PESP, resulting in the stabilization of PESP and consequently an increase in the production of IAV. These data reveal a critical lncRNA-encoded small protein that is induced and exploited by IAV during its infection, and provide a significant insight into IAV-host interaction network.

Indexed as

AutophagyInfluenza A virusRNA-Binding ProteinsRNA, Long NoncodingVirus ReplicationA549 CellsAnimalsDNA-Binding ProteinsHEK293 CellsHeterogeneous-Nuclear RibonucleoproteinsHumansInfluenza, HumanDNA-Binding ProteinsHeterogeneous-Nuclear RibonucleoproteinsPCBP1 protein, humanRNA-Binding ProteinsRNA, Long Noncoding

Identifiers

PMID39137200
PMCPMC11343454

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.