Evidence map›Paper›PMID 39135338›Full record

ArticleJournal of cellular and molecular medicine2024

In silico analysis of potential inhibitors for breast cancer targeting 17beta-hydroxysteroid dehydrogenase type 1 (17beta-HSD1) catalyses.

Md Rezaul Islam, Jehad Zuhair Tayyeb, Hridoy Kumar Paul, Mirza Nafeul Islam, Gbolahan Oladipupo Oduselu, Imren Bayıl, Magda H Abdellattif, Khairia Mohammed Al-Ahmary, Saedah R Al-Mhyawi, Magdi E A Zaki

Abstract read
In one paragraph

Article in Journal of cellular and molecular medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Md Rezaul IslamDepartment of Pharmacy, Faculty of Allied Health Sciences, Daffodil International University, Dhaka, Bangladesh.ORCID 0000-0001-6949-8837
Jehad Zuhair TayyebDepartment of Clinical Biochemistry, College of Medicine, University of Jeddah, Jeddah, Saudi Arabia.
Hridoy Kumar PaulDepartment of Pharmacy, Jashore University of Science and Technology, Jashore, Bangladesh.
Mirza Nafeul IslamDepartment of Pharmacy, University of Rajshahi, Rajshahi, Bangladesh.ORCID 0009-0002-2624-6589
Gbolahan Oladipupo OduseluCovenant University Bioinformatics Research, Ota, Nigeria.
Imren BayılDepartment of bioinformatics and computational biology, Gaziantep University, Gaziantep, Turkey.
Magda H AbdellattifDepartment of Chemistry, Sciences College, University College of Taraba, Taif University, Taif, Saudi Arabia.ORCID 0000-0002-8562-4749
Khairia Mohammed Al-AhmaryDepartment of Chemistry, College of Science, University of Jeddah, Jeddah, Saudi Arabia.ORCID 0000-0003-0466-3859
Saedah R Al-MhyawiDepartment of Chemistry, College of Science, University of Jeddah, Jeddah, Saudi Arabia.
Magdi E A ZakiDepartment of Chemistry, College of Science, Imam Mohammad Ibn Saud Islamic University Riyadh, Riyadh, Saudi Arabia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Breast cancer (BC) is still one of the major issues in world health, especially for women, which necessitates innovative therapeutic strategies. In this study, we investigated the efficacy of retinoic acid derivatives as inhibitors of 17beta-hydroxysteroid dehydrogenase type 1 (17beta-HSD1), which plays a crucial role in the biosynthesis and metabolism of oestrogen and thereby influences the progression of BC and, the main objective of this investigation is to identify the possible drug candidate against BC through computational drug design approach including PASS prediction, molecular docking, ADMET profiling, molecular dynamics simulations (MD) and density functional theory (DFT) calculations. The result has reported that total eight derivatives with high binding affinity and promising pharmacokinetic properties among 115 derivatives. In particular, ligands 04 and 07 exhibited a higher binding affinity with values of -9.9 kcal/mol and -9.1 kcal/mol, respectively, than the standard drug epirubicin hydrochloride, which had a binding affinity of -8.2 kcal/mol. The stability of the ligand-protein complexes was further confirmed by MD simulations over a 100-ns trajectory, which included assessments of hydrogen bonds, root mean square deviation (RMSD), root mean square Fluctuation (RMSF), dynamic cross-correlation matric (DCCM) and principal component analysis. The study emphasizes the need for experimental validation to confirm the therapeutic utility of these compounds. This study enhances the computational search for new BC drugs and establishes a solid foundation for subsequent experimental and clinical research.

Indexed as

Breast NeoplasmsMolecular Docking SimulationMolecular Dynamics Simulation17-Hydroxysteroid DehydrogenasesAntineoplastic AgentsComputer SimulationDrug DesignEnzyme InhibitorsFemaleHumansHydrogen BondingLigandsProtein BindingTretinoin17-Hydroxysteroid DehydrogenasesAntineoplastic AgentsEnzyme InhibitorsLigandsTretinoinbreast cancerDFT calculationin silico studiesmolecular dockingmolecular dynamics simulationpass predictionretinoic acid

Identifiers

PMID39135338
PMCPMC11319393

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.