Evidence map›Paper›PMID 39134841›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Analysis of Neurite and Spine Formation in Neurons In Vitro.

Jenny R Diaz, Martin J Sadowski

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Jenny R DiazDepartments of Neurology, New York University Grossman School of Medicine, New York, NY, USA.
Martin J SadowskiDepartments of Neurology, New York University Grossman School of Medicine, New York, NY, USA. sadowm01@med.nyu.edu.

Funding

Role of Microglia in Neurodegeneration -Effect of ApoER01AG075840 · NIA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MARTIN Joseph SADOWSKI · 2022 to 2026
$3.4M
Apolipoprotein E genotype modulates brain mitovesicle production, a component of mitochondrial quality controlRF1AG088226 · NIA · NATHAN S. KLINE INSTITUTE FOR PSYCH RES · PI LEVY, EFRAT, MATHEWS, PAUL M · 2024 to 2024
$2.5M
Mechanisms of Peroxiredoxin 6 Endowed Protection in Alzheimer’s DiseaseR01AG067478 · NIA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SADOWSKI, MARTIN JOSEPH · 2020 to 2024
$2.1M
NIA NIH HHS R01 AG067478NIA NIH HHS R01 AG075840NIA NIH HHS RF1 AG088226
6 · The paper itself

Abstract

Primary neuronal cultures are commonly used to study genetic and exogenous factors influencing neuronal development and maturation. During development, neurons undergo robust morphological changes involving expansion of dendritic arbor, formation of dendritic spines, and expression of synaptic proteins. In this chapter, we will cover methodological approaches allowing quantitative assessment of in vitro cultured neurons. Various quantitative characteristics of dendritic arbor can be derived based on immunostaining against anti-microtubule-associated protein 2 followed by dendrite tracing with the SNT plug-in of the FIJI software package. The number and subtypes of dendritic spines can be assessed by double labeling with DiI and Phalloidin iFluor448 followed by laser scanning confocal microscopy analysis. Finally, expression of presynaptic and postsynaptic proteins can be determined by immunohistochemistry and quantification using several available software packages including FIJI and Imaris, which also allows for 3D rendering and statistical displaying of the expression level of synaptic proteins.

Indexed as

Dendritic SpinesNeuritesNeuronsAnimalsCells, CulturedImmunohistochemistryMiceMicroscopy, ConfocalMicrotubule-Associated ProteinsNeurogenesisSoftwareSynapsesMicrotubule-Associated ProteinsDendritic arborDendritic spinesFIJIFluorescent microscopyImarisLaser scanning confocal microscopyNeuronal culturesSynaptic proteins

Identifiers

PMID39134841
PMCPMC11684374

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.