Evidence map›Paper›PMID 39134711›Full record

ArticleNature structural & molecular biology2024

Structural basis of LRPPRC-SLIRP-dependent translation by the mitoribosome.

Vivek Singh, J Conor Moran, Yuzuru Itoh, Iliana C Soto, Flavia Fontanesi, Mary Couvillion, Martijn A Huynen, L Stirling Churchman, Antoni Barrientos, Alexey Amunts

Erratum issuedAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. CryoAtom improves model building for cryo-EM.Nature structural & molecular biology · 2026
    Article
  15. Article
  16. Article
  17. Structural Basis of TACO1-Mediated Efficient Mitochondrial Translation.bioRxiv : the preprint server for biology · 2025
    Article
  18. The late stages of yeast mitoribosome large subunit biogenesis.Biochimica et biophysica acta. Molecular cell research · 2025
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Vivek Singh *Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, Sweden.
J Conor Moran *Medical Scientist Training Program, Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL, USA.
Yuzuru ItohScience for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, Sweden. yuzuru.itoh@bs.s.u-tokyo.ac.jp.
Iliana C SotoBlavatnik Institute, Department of Genetics, Harvard Medical School, Boston, MA, USA.
Flavia FontanesiMedical Scientist Training Program, Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, Miami, FL, USA.
Mary CouvillionBlavatnik Institute, Department of Genetics, Harvard Medical School, Boston, MA, USA.
Martijn A HuynenDepartment of Medical BioSciences, Radboud University Medical Center, Nijmegen, The Netherlands.
L Stirling ChurchmanBlavatnik Institute, Department of Genetics, Harvard Medical School, Boston, MA, USA. churchman@genetics.med.harvard.edu.
Antoni BarrientosDepartment of Neurology, University of Miami Miller School of Medicine, Miami, FL, USA. abarrientos@med.miami.edu.
Alexey AmuntsScience for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, Sweden. alexey.amunts@gmail.com.ORCID http://orcid.org/0000-0002-5302-1740

Funding

Mitochondrial Biogenesis in Health and DiseaseR35GM118141 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BARRIENTOS, ANTONI · 2016 to 2025
$8.9M
Nuclear-mitochondrial co-regulation during mitochondrial biogenesisR01GM123002 · NIGMS · HARVARD MEDICAL SCHOOL · PI CHURCHMAN, LEE STIRLING · 2017 to 2020
$1.3M
Mitochondrial mRNA structure as a driver of Leigh SyndromeF30HD107939 · NICHD · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI MORAN, JOHN CONOR · 2022 to 2025
$194k
NICHD NIH HHS F30 HD107939NIGMS NIH HHS R01 GM123002NIGMS NIH HHS R35 GM118141
6 · The paper itself

Abstract

In mammalian mitochondria, mRNAs are cotranscriptionally stabilized by the protein factor LRPPRC (leucine-rich pentatricopeptide repeat-containing protein). Here, we characterize LRPPRC as an mRNA delivery factor and report its cryo-electron microscopy structure in complex with SLIRP (SRA stem-loop-interacting RNA-binding protein), mRNA and the mitoribosome. The structure shows that LRPPRC associates with the mitoribosomal proteins mS39 and the N terminus of mS31 through recognition of the LRPPRC helical repeats. Together, the proteins form a corridor for handoff of the mRNA. The mRNA is directly bound to SLIRP, which also has a stabilizing function for LRPPRC. To delineate the effect of LRPPRC on individual mitochondrial transcripts, we used RNA sequencing, metabolic labeling and mitoribosome profiling, which showed a transcript-specific influence on mRNA translation efficiency, with cytochrome c oxidase subunit 1 and 2 translation being the most affected. Our data suggest that LRPPRC-SLIRP acts in recruitment of mitochondrial mRNAs to modulate their translation. Collectively, the data define LRPPRC-SLIRP as a regulator of the mitochondrial gene expression system.

Indexed as

Cryoelectron MicroscopyMitochondrial ProteinsMitochondrial RibosomesProtein BiosynthesisRNA-Binding ProteinsRNA, MessengerAnimalsHumansMitochondriaModels, MolecularNeoplasm ProteinsProtein BindingLRPPRC protein, humanMitochondrial ProteinsNeoplasm ProteinsRNA-Binding ProteinsRNA, MessengerSLIRP protein, human

Identifiers

PMID39134711
PMCPMC11637978

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.