Evidence map›Paper›PMID 39134708›Full record

ArticleNature microbiology2024

Staphylococcus aureus adapts to exploit collagen-derived proline during chronic infection.

Andreacarola Urso, Ian R Monk, Ying-Tsun Cheng, Camilla Predella, Tania Wong Fok Lung, Erin M Theiller, Jack Boylan, Sofya Perelman, Swikrity U Baskota, Ahmed M Moustafa and 7 more

Abstract read
In one paragraph

Article in Nature microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. GrowingInfection and immunity · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. ArgT functions as an arginine transporter inJournal of bacteriology · 2025
    Article
  12. Article
  13. Article
  14. Pathogen adaptation to lung metabolites.Current opinion in microbiology · 2025
    Review
  15. Article
  16. Review
  17. Review
  18. A year of microbiology.Nature microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Andreacarola UrsoDepartment of Pediatric Infectious Diseases, Columbia University, New York, NY, USA.
Ian R MonkDepartment of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0001-6982-8074
Ying-Tsun ChengDepartment of Pediatric Infectious Diseases, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-2966-3153
Camilla PredellaDepartment of Pediatrics, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0003-3699-0256
Tania Wong Fok LungDepartment of Pharmacology, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-9318-9572
Erin M TheillerDepartment of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Jack BoylanDepartment of Pharmacology, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-2563-3192
Sofya PerelmanDepartment of Microbiology, New York University, New York, NY, USA.
Swikrity U BaskotaDepartment of Pathology, Columbia University, New York, NY, USA.
Ahmed M MoustafaDepartment of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-9949-6936
Gaurav LohiaDepartment of Pharmacology, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-4186-621X
Ian A LewisDepartment of Biological Sciences, University of Calgary, Calgary, Alberta, Canada.ORCID http://orcid.org/0000-0002-5753-499X
Benjamin P HowdenDepartment of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0003-0237-1473
Timothy P StinearDepartment of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0003-0150-123X
Nicolino V DorrelloDepartment of Pediatrics, Columbia University, New York, NY, USA.
Victor TorresDepartment of Microbiology, New York University, New York, NY, USA.ORCID http://orcid.org/0000-0002-7126-0489
Alice S PrinceDepartment of Pediatric Infectious Diseases, Columbia University, New York, NY, USA. asp7@cumc.columbia.edu.ORCID http://orcid.org/0000-0002-7399-9295

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
Innate Immune Clearance of Host-Adapted Pulmonary PathogensR35HL135800 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PRINCE, ALICE S · 2017 to 2023
$5.9M
Becton Dickinson LSR II Analytical Flow CytometerS10RR027050 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CLYNES, RAPHAEL A. · 2011 to 2011
$413k
NCI NIH HHS P30 CA013696NCRR NIH HHS S10 RR027050NHLBI NIH HHS R35 HL135800
6 · The paper itself

Abstract

Staphylococcus aureus is a pulmonary pathogen associated with substantial human morbidity and mortality. As vaccines targeting virulence determinants have failed to be protective in humans, other factors are likely involved in pathogenesis. Here we analysed transcriptomic responses of human clinical isolates of S. aureus from initial and chronic infections. We observed upregulated collagenase and proline transporter gene expression in chronic infection isolates. Metabolomics of bronchiolar lavage fluid and fibroblast infection, growth assays and analysis of bacterial mutant strains showed that airway fibroblasts produce collagen during S. aureus infection. Host-adapted bacteria upregulate collagenase, which degrades collagen and releases proline. S. aureus then imports proline, which fuels oxidative metabolism via the tricarboxylic acid cycle. Proline metabolism provides host-adapted S. aureus with a metabolic benefit enabling out-competition of non-adapted strains. These data suggest that clinical settings characterized by airway repair processes and fibrosis provide a milieu that promotes S. aureus adaptation and supports infection.

Indexed as

CollagenCollagenasesFibroblastsProlineStaphylococcal InfectionsStaphylococcus aureusAdaptation, PhysiologicalBacterial ProteinsCitric Acid CycleGene Expression ProfilingGene Expression Regulation, BacterialHumansPersistent InfectionBacterial ProteinsCollagenCollagenasesProline

Identifiers

PMID39134708
PMCPMC11445067

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.