Evidence map›Paper›PMID 39134564›Full record

ArticleScientific reports2024

Multiple Transcriptomic Analyses Explore Potential Synaptic Biomarker Rabphilin-3A for Alzheimer's Disease.

Doan Phuong Quy Nguyen, Son Pham, Amadou Wurry Jallow, Nguyen-Tuong Ho, Bao Le, Hung Tran Quang, Yi-Fang Lin, Yung-Feng Lin

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Doan Phuong Quy NguyenPh.D. Program in Medical Biotechnology, College of Medical Science and Technology, Taipei Medical University, No. 301, Yuantong Rd., Zhonghe Dist., New Taipei City, 235, Taiwan.
Son PhamBioTuring Inc., San Diego, CA, 92121, USA.
Amadou Wurry JallowPh.D. Program in Medical Biotechnology, College of Medical Science and Technology, Taipei Medical University, No. 301, Yuantong Rd., Zhonghe Dist., New Taipei City, 235, Taiwan.
Nguyen-Tuong HoIVFMD, My Duc Hospital, Ho Chi Minh City, 700000, Vietnam.
Bao LeFaculty of Pharmacy, Ton Duc Thang University, Ho Chi Minh City, Vietnam.
Hung Tran QuangSchool of Medical Laboratory Science and Biotechnology, College of Medical Science and Technology, Taipei Medical University, New Taipei City, 235, Taiwan.
Yi-Fang LinDepartment of Laboratory Medicine, Taipei Medical University-Shuang Ho Hospital, New Taipei City, 235, Taiwan.
Yung-Feng LinPh.D. Program in Medical Biotechnology, College of Medical Science and Technology, Taipei Medical University, No. 301, Yuantong Rd., Zhonghe Dist., New Taipei City, 235, Taiwan. yflin@tmu.edu.tw.

Funding

Taipei Medical University-Shuang Ho Hospital, Ministry of Health and Welfare 112FRP-29
6 · The paper itself

Abstract

Alzheimer's disease (AD) is a prevalent neurodegenerative disorder afflicting the elderly population worldwide. The identification of potential gene candidates for AD holds promises for diagnostic biomarkers and therapeutic targets. Employing a comprehensive strategy, this study integrated transcriptomic data from diverse data sources, including microarray and single-cell datasets from blood and tissue samples, enabling a detailed exploration of gene expression dynamics. Through this thorough investigation, 19 notable candidate genes were found with consistent expression changes across both blood and tissue datasets, suggesting their potential as biomarkers for AD. In addition, single cell sequencing analysis further highlighted their specific expression in excitatory and inhibitory neurons, the primary functional units in the brain, underscoring their relevance to AD pathology. Moreover, the functional enrichment analysis revealed that three of the candidate genes were downregulated in synaptic signaling pathway. Further validation experiments significantly showed reduced levels of rabphilin-3A (RPH3A) in 3xTg-AD model mice, implying its role in disease pathogenesis. Given its role in neurotransmitter exocytosis and synaptic function, further investigation into RPH3A and its interactions with neurotrophic proteins may provide valuable insights into the complex molecular mechanisms underlying synaptic dysfunction in AD.

Indexed as

Alzheimer DiseaseBiomarkersGene Expression ProfilingRabphilin-3AAnimalsDisease Models, AnimalHumansMiceMice, TransgenicNeuronsSingle-Cell AnalysisSynapsesTranscriptomeBiomarkersRabphilin-3AAlzheimer’s diseaseMicroarrayRabphilin-3ASynaptic signalingTranscriptome

Identifiers

PMID39134564
PMCPMC11319786

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.