Evidence map›Paper›PMID 39134533›Full record

ArticleNature communications2024

Sex-specific role for the long noncoding RNA Pnky in mouse behavior.

Parna Saha, Rebecca E Andersen, Sung Jun Hong, Eugene Gil, Jeffrey Simms, Hyeonseok Choi, Daniel A Lim

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. The Long Non-coding RNA Landscape of Endurance Exercise Training.bioRxiv : the preprint server for biology · 2025
    Article
  5. Structural basis for the function of long noncoding RNAbioRxiv : the preprint server for biology · 2025
    Article
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Parna SahaDepartment of Neurological Surgery, University of California, San Francisco, San Francisco, CA, 94143, USA.
Rebecca E AndersenDepartment of Neurological Surgery, University of California, San Francisco, San Francisco, CA, 94143, USA.ORCID 0000-0002-0702-3120
Sung Jun HongDepartment of Neurological Surgery, University of California, San Francisco, San Francisco, CA, 94143, USA.
Eugene GilDepartment of Neurological Surgery, University of California, San Francisco, San Francisco, CA, 94143, USA.
Jeffrey SimmsBehavioral Core, Gladstone Institutes, San Francisco, CA, 94158, USA.
Hyeonseok ChoiDepartment of Molecular and Cell Biology Undergraduate Program, University of California, Berkeley, Berkeley, CA, 94720, USA.
Daniel A LimDepartment of Neurological Surgery, University of California, San Francisco, San Francisco, CA, 94143, USA. Daniel.Lim@ucsf.edu.ORCID 0000-0001-7221-3425

Funding

Functional long noncoding RNAs in neural developmentR01NS124881 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DANIEL A LIM · 2022 to 2026
$3.0M
Long noncoding RNA regulation of neural stem cellsR01NS091544 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, DANIEL A · 2016 to 2020
$1.7M
Role of MLL Chromatin Remodeling Factor in Neural Stem CellsI01BX000252 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI DANIEL A LIM · 2009 to 2026
–
BLRD VA I01 BX000252NINDS NIH HHS R01 NS091544NINDS NIH HHS R01 NS124881U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) 1R01NS124881
6 · The paper itself

Abstract

The aberrant expression of specific long noncoding RNAs (lncRNAs) has been associated with cognitive and psychiatric disorders. Although a growing number of lncRNAs are now known to regulate neural cell development and function, relatively few lncRNAs have been shown to underlie animal behavior. Pnky is an evolutionarily conserved, neural lncRNA that regulates brain development. Using mouse genetic strategies, we show that Pnky has sex-specific roles in mouse behavior and that this lncRNA can underlie specific behavior by functioning in trans. Male Pnky-knockout mice have decreased context generalization in a paradigm of associative fear learning and memory. In female Pnky-knockout mice, there is an increase in the acoustic startle response, a behavior that is altered in affective disorders. Remarkably, expression of Pnky from a bacterial artificial chromosome transgene decreases the acoustic startle response in female Pnky-knockout mice, demonstrating that Pnky can modulate specific animal behavior by functioning in trans. More broadly, these studies illustrate how specific lncRNAs can underlie cognitive and mood disorders.

Indexed as

Behavior, AnimalFearMice, KnockoutReflex, StartleRNA, Long NoncodingAnimalsFemaleMaleMemoryMiceMice, Inbred C57BLSex FactorsRNA, Long Noncoding

Identifiers

PMID39134533
PMCPMC11319455

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.