Evidence map›Paper›PMID 39133851›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Sound-mediated nucleation and growth of amyloid fibrils.

Anna Kozell, Aleksei Solomonov, Roman Gaidarov, Doron Benyamin, Irit Rosenhek-Goldian, Harry Mark Greenblatt, Yaakov Levy, Ariel Amir, Uri Raviv, Ulyana Shimanovich

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Protein folding: From physics-chemical rules and cellular machineries of protein quality control to AI solutions.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Anna Kozell *Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, 7610001 Rehovot, Israel.ORCID 0000-0001-9806-1060
Aleksei Solomonov *Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, 7610001 Rehovot, Israel.ORCID 0000-0002-4582-3102
Roman GaidarovDepartment of Physics of Complex Systems, Weizmann Institute of Science, 7610001 Rehovot, Israel.ORCID 0009-0009-7913-1428
Doron BenyaminInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Irit Rosenhek-GoldianDepartment of Chemical Research Support, Weizmann Institute of Science, 7610001 Rehovot, Israel.
Harry Mark GreenblattDepartment of Chemical and Structural Biology, Weizmann Institute of Science, 7610001 Rehovot, Israel.
Yaakov LevyDepartment of Chemical and Structural Biology, Weizmann Institute of Science, 7610001 Rehovot, Israel.ORCID 0000-0002-9929-973X
Ariel AmirDepartment of Physics of Complex Systems, Weizmann Institute of Science, 7610001 Rehovot, Israel.
Uri RavivInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.ORCID 0000-0001-5992-9437
Ulyana ShimanovichDepartment of Molecular Chemistry and Materials Science, Weizmann Institute of Science, 7610001 Rehovot, Israel.ORCID 0000-0003-3148-0142

Funding

ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
NIGMS NIH HHS R01 GM129325
6 · The paper itself

Abstract

Mechanical energy, specifically in the form of ultrasound, can induce pressure variations and temperature fluctuations when applied to an aqueous media. These conditions can both positively and negatively affect protein complexes, consequently altering their stability, folding patterns, and self-assembling behavior. Despite much scientific progress, our current understanding of the effects of ultrasound on the self-assembly of amyloidogenic proteins remains limited. In the present study, we demonstrate that when the amplitude of the delivered ultrasonic energy is sufficiently low, it can induce refolding of specific motifs in protein monomers, which is sufficient for primary nucleation; this has been revealed by MD. These ultrasound-induced structural changes are initiated by pressure perturbations and are accelerated by a temperature factor. Furthermore, the prolonged action of low-amplitude ultrasound enables the elongation of amyloid protein nanofibrils directly from natively folded monomeric lysozyme protein, in a controlled manner, until it reaches a critical length. Using solution X-ray scattering, we determined that nanofibrillar assemblies, formed either under the action of sound or from natively fibrillated lysozyme, share identical structural characteristics. Thus, these results provide insights into the effects of ultrasound on fibrillar protein self-assembly and lay the foundation for the potential use of sound energy in protein chemistry.

Indexed as

AmyloidMuramidaseMolecular Dynamics SimulationProtein FoldingTemperatureUltrasonic WavesAmyloidMuramidaseamyloidfibrillar protein self-assemblymolecular dynamics simulationssmall-angle X-ray scatteringultrasound

Identifiers

PMID39133851
PMCPMC11348332

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.