Evidence map›Paper›PMID 39133136›Full record

ArticleBioinformatics (Oxford, England)2024

ceas: an R package for Seahorse data analysis and visualization.

Rachel Rae J House, James P Eapen, Hui Shen, Carrie R Graveel, Matthew R Steensma

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rachel Rae J HouseDepartment of Cell Biology, Van Andel Research Institute, Grand Rapids, MI 49503, United States.ORCID 0000-0003-2176-0431
James P EapenDepartment of Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503, United States.ORCID 0000-0001-6016-3598
Hui ShenDepartment of Epigenetics, Van Andel Research Institute, Grand Rapids, MI 49503, United States.ORCID 0000-0001-9767-4084
Carrie R GraveelDepartment of Cell Biology, Van Andel Research Institute, Grand Rapids, MI 49503, United States.ORCID 0000-0001-7251-5642
Matthew R SteensmaDepartment of Cell Biology, Van Andel Research Institute, Grand Rapids, MI 49503, United States.ORCID 0000-0002-9003-6730

Funding

Cancer Epigenetics Training (CET) ProgramT32CA251066 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI Scott Rothbart · 2021 to 2026
$2.4M
NCI NIH HHS 5T32CA251066-03NCI NIH HHS T32 CA251066
6 · The paper itself

Abstract

summaryMeasuring cellular energetics is essential to understanding a matrix's (e.g. cell, tissue, or biofluid) metabolic state. The Agilent Seahorse machine is a common method to measure real-time cellular energetics, but existing analysis tools are highly manual or lack functionality. The Cellular Energetics Analysis Software (ceas) R package fills this analytical gap by providing modular and automated Seahorse data analysis and visualization. AVAILABILITY AND IMPLEMENTATION: ceas is available on CRAN (https://cran.r-project.org/package=ceas). Source code and installable tarballs are freely available for download at https://github.com/jamespeapen/ceas/releases/ under the MIT license. Package documentation may be found at https://jamespeapen.github.io/ceas/. ceas is implemented in R and is supported on macOS, Windows and Linux.

Indexed as

SoftwareAnimalsComputational Biology

Identifiers

PMID39133136
PMCPMC11349193

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.