Evidence map›Paper›PMID 39131680›Full record

ArticleGastro hep advances2022

Discovery and Validation of Methylated DNA Markers From Pancreatic Neuroendocrine Tumors.

Shounak Majumder, Thorvardur R Halfdanarson, Calise K Berger, Patrick H Foote, Xiaoming Cao, Maria C McGlinch, Brianna J Gysbers, Jaime de La Fuente, Mariah J Robran, Karen A Doering and 8 more

Abstract read
In one paragraph

Article in Gastro hep advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Shounak MajumderDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
Thorvardur R HalfdanarsonDivision of Medical Oncology, Mayo Clinic, Rochester, Minnesota.
Calise K BergerDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
Patrick H FooteDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
Xiaoming CaoDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
Maria C McGlinchDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
Brianna J GysbersDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
Jaime de La FuenteDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
Mariah J RobranDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
Karen A DoeringDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
Kelli N BurgerDivision of Clinical Trials and Biostatistics, Mayo Clinic, Rochester, Minnesota.
William E BamletDivision of Clinical Trials and Biostatistics, Mayo Clinic, Rochester, Minnesota.
Ann L ObergDivision of Quantitative Health Sciences, Mayo Clinic, Rochester, Minnesota.
Douglas W MahoneyDivision of Clinical Trials and Biostatistics, Mayo Clinic, Rochester, Minnesota.
Rondell P GrahamDivision of Anatomic Pathology, Mayo Clinic, Rochester, Minnesota.
William R TaylorDivision of Quantitative Health Sciences, Mayo Clinic, Rochester, Minnesota.
Gloria M PetersenDivision of Epidemiology, Mayo Clinic, Rochester, Minnesota.
John B KisielDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI AKHILESH PANDEY · 1985 to 2026
$151.3M
Tissue CoreP50CA102701 · NCI · MAYO CLINIC ROCHESTER · PI MUKHOPADHYAY, DEBABRATA · 2004 to 2018
$32.7M
PILOT AND FEASIBILTY PROGRAMP30DK084567 · NIDDK · MAYO CLINIC ROCHESTER · PI Nicholas F. LaRusso · 2009 to 2026
$22.2M
Mayo Clinic Prospective Resource for Biomarker Validation and Early Detection of Pancreatic CancerU01CA210138 · NCI · MAYO CLINIC ROCHESTER · PI Shounak Majumder, Kenneth Zaret · 2016 to 2026
$9.0M
Multi-site Gastrointestinal Cancer Detection by Stool DNA MethylationR37CA214679 · NCI · MAYO CLINIC ROCHESTER · PI KISIEL, JOHN · 2018 to 2024
$2.8M
Multi-cancer Early DetectionR01CA214679 · NCI · MAYO CLINIC ROCHESTER · PI John Kisiel, Niloy Jewel Samadder · 2025 to 2026
$891k
NCI NIH HHS P30 CA015083NCI NIH HHS P50 CA102701NCI NIH HHS R01 CA214679NCI NIH HHS R37 CA214679NCI NIH HHS U01 CA210138NIDDK NIH HHS P30 DK084567
6 · The paper itself

Abstract

Background and Aims: Methylated DNA markers (MDMs) accurately identify several different cancer types, but there are limited data for pancreatic neuroendocrine tumors (pNETs). We aimed to identify MDM candidates in tissue that differentiate pNETs from normal pancreas. Methods: wUsing DNA from frozen normal pancreas (13) and pNET (51) tissues, we performed reduced representation bisulfite sequencing for MDM discovery. Validation in independent formalin fixed paraffin embedded tissues used pNET cases (67; solid = 50, cystic = 17), normal pancreas (24), and buffy coat (36) controls. Primary pNET MDM distributions were compared with lung (36), small bowel (36) NETs, and metastatic pNET (25) tissues. The discrimination accuracy was summarized as the area under the receiver operator characteristic curve (AUC) with corresponding 95% confidence intervals (CIs). Fisher's linear discriminant analysis was performed to estimate a linear discriminate score (LDS) differentiating normal from pNET tissue and applied to all patient groups; discrimination accuracy of the LDS was summarized as the bootstrap cross-validated AUC. Results: Median AUC for distinguishing normal pancreas from pNET tissue was 0.91 (interquartile range: 0.80-0.93). The cross-validated AUC for the LDS discriminating normal pancreatic tissue from primary and metastatic pNETs was 0.957 (95% CI 0.858-1.0, Conclusion: In independent tissue validation, MDMs accurately discriminate pNETs from normal pancreas. These results provide scientific rationale for exploration of these tissue MDMs in a plasma-based assay for clinical application.

Indexed as

BiomarkerDNA MethylationNeuroendocrine TumorsPancreatic Neoplasms

Identifiers

PMID39131680
PMCPMC11307501

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.