Evidence map›Paper›PMID 39131327›Full record

ArticlebioRxiv : the preprint server for biology2024

Fast Targeted Metabolomics for Analyzing Metabolic Diversity of Bacterial Indole Derivatives in ME/CFS Gut Microbiome.

Huidi Tian, Lei Wang, Elizabeth Aiken, Robert Jervine V Ortega, Rachel Hardy, Lindsey Placek, Lina Kozhaya, Derya Unutmaz, Julia Oh, Xudong Yao

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Huidi TianDepartment of Chemistry, University of Connecticut, Storrs, Connecticut 06269, United States.
Lei WangDepartment of Chemistry, University of Connecticut, Storrs, Connecticut 06269, United States.
Elizabeth AikenThe Jackson Laboratory, 10 Discovery Drive, Farmington, Connecticut 06032, United States.
Robert Jervine V OrtegaDepartment of Chemistry, University of Connecticut, Storrs, Connecticut 06269, United States.
Rachel HardyThe Jackson Laboratory, 10 Discovery Drive, Farmington, Connecticut 06032, United States.
Lindsey PlacekThe Jackson Laboratory, 10 Discovery Drive, Farmington, Connecticut 06032, United States.
Lina KozhayaThe Jackson Laboratory, 10 Discovery Drive, Farmington, Connecticut 06032, United States.
Derya UnutmazThe Jackson Laboratory, 10 Discovery Drive, Farmington, Connecticut 06032, United States.ORCID 0000-0001-8898-6633
Julia OhThe Jackson Laboratory, 10 Discovery Drive, Farmington, Connecticut 06032, United States.
Xudong YaoDepartment of Chemistry, University of Connecticut, Storrs, Connecticut 06269, United States.ORCID 0000-0001-9432-5065

Funding

Topological Mapping of Immune, Microbiota, Metabolomic and Clinical Phenotypes to Reveal ME/CFS Disease Mechanisms - Clinical Research ProjectU54NS105539 · NINDS · JACKSON LABORATORY · PI VERNON, SUZANNE D · 2017 to 2022
$10.6M
NINDS NIH HHS U54 NS105539
6 · The paper itself

Abstract

Disruptions in microbial metabolite interactions due to gut microbiome dysbiosis and metabolomic shifts may contribute to Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) and other immune-related conditions. The aryl hydrocarbon receptor (AhR), activated upon binding various tryptophan metabolites, modulates host immune responses. This study investigates whether the metabolic diversity-the concentration distribution-of bacterial indole pathway metabolites can differentiate bacterial strains and classify ME/CFS samples. A fast targeted liquid chromatography-parallel reaction monitoring method at a rate of 4 minutes per sample was developed for large-scale analysis. This method revealed significant metabolic differences in indole derivatives among

Identifiers

PMID39131327
PMCPMC11312560

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.