Evidence map›Paper›PMID 39131301›Full record

ArticlebioRxiv : the preprint server for biology2024

Structures of H2A.Z-associated human chromatin remodelers SRCAP and TIP60 reveal divergent mechanisms of chromatin engagement.

Giho Park, Avinash B Patel, Carl Wu, Robert K Louder

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Giho ParkBiochemistry, Cellular and Molecular Graduate Program, Johns Hopkins School of Medicine; Baltimore, MD 21205, USA.ORCID 0000-0002-0625-9772
Avinash B PatelDepartment of Biophysics, Johns Hopkins University; Baltimore, MD 21218, USA.ORCID 0000-0001-9140-8375
Carl WuDepartment of Molecular Biology and Genetics, Johns Hopkins School of Medicine; Baltimore, MD 21205, USA.ORCID 0000-0001-6933-5763
Robert K LouderDepartment of Molecular Biology and Genetics, Johns Hopkins School of Medicine; Baltimore, MD 21205, USA.ORCID 0000-0002-6944-9346

Funding

Kinetic Mechanisms of Chromatin Remodeling and TranscriptionR35GM149291 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Carl Wu · 2023 to 2026
$3.6M
Mechanism of histone H2A.Z exchange catalyzed by SWR1 chromatin remodelerR01GM125831 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI WU, CARL · 2018 to 2021
$2.3M
High resolution chromatin structure of purified eukaryotic genesF32GM133151 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI LOUDER, ROBERT KENNETH · 2019 to 2021
$195k
NIGMS NIH HHS F32 GM133151NIGMS NIH HHS R01 GM125831NIGMS NIH HHS R35 GM149291
6 · The paper itself

Abstract

H2A.Z is a conserved histone variant that is localized to specific genomic regions where it plays important roles in transcription, DNA repair, and replication. Central to the biochemistry of human H2A.Z are the SRCAP and TIP60 chromatin remodelers, homologs of yeast SWR1 which catalyzes ATP-dependent H2A.Z exchange. Here, we use cryo-electron microscopy to resolve six structural states of the native SRCAP complex, uncovering conformational intermediates interpreted as a stepwise path to full nucleosome engagement. We also resolve the structure of the native TIP60 complex which consists of a structured core from which flexibly tethered chromatin binding domains emerge. Despite the shared subunit composition, the core of TIP60 displays divergent architectures from SRCAP that structurally disfavor nucleosome engagement, suggesting a distinct biochemical function.

Identifiers

PMID39131301
PMCPMC11312561

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.