Evidence map›Paper›PMID 39131267›Full record

ArticlebioRxiv : the preprint server for biology2024

Annotation Vocabulary (Might Be) All You Need.

Logan Hallee, Niko Rafailidis, Colin Horger, David Hong, Jason P Gleghorn

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Logan HalleeCenter for Bioinformatics and Computational Biology, University of Delaware.ORCID 0000-0002-0426-3508
Niko RafailidisCenter for Bioinformatics and Computational Biology, University of Delaware.
Colin HorgerDepartment of Biomedical Engineering, University of Delaware.
David HongDepartment of Electrical and Computer Engineering, University of Delaware.ORCID 0000-0003-4698-4175
Jason P GleghornCenter for Bioinformatics and Computational Biology, University of Delaware.ORCID 0000-0003-1283-2966

Funding

Mechanical Control of Cell Proliferation and Branching Morphogenesis in the Embryonic LungR01HL145147 · NHLBI · UNIVERSITY OF TEXAS DALLAS · PI VARNER, VICTOR D. · 2019 to 2023
$1.9M
Pressure in lung development and congenital diaphragmatic herniaR01HL133163 · NHLBI · UNIVERSITY OF DELAWARE · PI GLEGHORN, JASON PAUL · 2017 to 2021
$1.9M
NHLBI NIH HHS R01 HL133163NHLBI NIH HHS R01 HL145147
6 · The paper itself

Abstract

Protein Language Models (pLMs) have revolutionized the computational modeling of protein systems, building numerical embeddings that are centered around structural features. To enhance the breadth of biochemically relevant properties available in protein embeddings, we engineered the

Indexed as

Annotation Sequence ModelAnnotation TransformerContrastive Annotation Model for ProteinsContrastive learningGenerative Sequence ModelLanguage ModelingProtein annotationProtein design

Identifiers

PMID39131267
PMCPMC11312613

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.