Evidence map›Paper›PMID 39130406›Full record

ArticleHeliyon2024

Development and validation of prognostic signatures of NAD+ metabolism and immune-related genes in colorectal cancer.

Tao Ye, Hong Huang, Kangli Chen, Yuanao Yu, Dongqin Yue, Li Jiang, Huixian Wu, Ning Zhang

Abstract read
In one paragraph

Article in Heliyon, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tao YeDepartment of Rehabilitation, The First Affiliated Hospital of Guizhou University of Traditional Chinese Medicine, Guiyang 550001, Guizhou, China.
Hong HuangThe First Clinical College of Guizhou University of Traditional Chinese Medicine, Guiyang 550001, Guizhou, China.
Kangli ChenThe First Clinical College of Guizhou University of Traditional Chinese Medicine, Guiyang 550001, Guizhou, China.
Yuanao YuThe First Clinical College of Guizhou University of Traditional Chinese Medicine, Guiyang 550001, Guizhou, China.
Dongqin YueThe First Clinical College of Guizhou University of Traditional Chinese Medicine, Guiyang 550001, Guizhou, China.
Li JiangThe First Clinical College of Guizhou University of Traditional Chinese Medicine, Guiyang 550001, Guizhou, China.
Huixian WuThe First Clinical College of Guizhou University of Traditional Chinese Medicine, Guiyang 550001, Guizhou, China.
Ning ZhangDepartment of Pharmacy, The First Affiliated Hospital of Guizhou University of Traditional Chinese Medicine, Guiyang 550001, Guizhou, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Colorectal cancer (CRC) is a prevalent cause of death from malignant tumors. This study aimed to develop a nicotinamide adenine dinucleotide (NAD+) metabolism and immune-related prognostic signature, providing a theoretical foundation for prognosis and therapy in CRC patients. Methods: NAD + metabolism-related and immune-related subtypes of CRC patients were identified by consistent clustering. Differentially expressed genes (DEGs) between the two subtypes of CRC were identified by overlapping. A risk signature was constructed using univariate Cox and least absolute shrinkage and selection operator (LASSO) regression analyses. Independent prognostic predictors were authenticated by Cox analysis. Gene set variation analysis (GSVA) and single-sample gene set enrichment analysis (ssGSEA) were applied to investigate the connection between the prognostic signature and the immune microenvironment. Chemotherapy drug sensitivity and immunotherapy responsiveness were projected using the 'pRRophetic' package and Tumor Immune Dysfunction and Exclusion (TIDE) website. The Human Protein Atlas (HPA) database was used to assess the protein expression of prognostic genes in CRC and normal tissues. Results: Using bioinformatics methods, three prognostic genes related to immune-related NAD + metabolism were identified, and the results were used to establish and verify a prognostic signature related to immune-related NAD + metabolism in CRC patients. Cox regression analysis confirmed that the risk score was a reliable independent prognostic predictor. GSVA and ssGSEA indicated that the prognostic signature was associated with the immune microenvironment. TIDE analysis suggested that the signature might act as an immunotherapy predictor. Chemotherapy sensitivity analysis revealed that Conclusion: This study identified NAD + metabolism-immune-related prognostic genes (

Indexed as

Colorectal cancerImmune-related genesNAD+ metabolism-related genesPrognostic signature

Identifiers

PMID39130406
PMCPMC11315184

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