Evidence map›Paper›PMID 39129654›Full record

ArticleG3 (Bethesda, Md.)2024

Pathogen infection alters the gene expression landscape of transposable elements in Drosophila melanogaster.

Sabrina L Mostoufi, Nadia D Singh

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Sabrina L MostoufiDepartment of Biology, Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA.ORCID 0000-0003-1994-5314
Nadia D SinghDepartment of Biology, Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA.ORCID 0000-0001-6506-7001

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposable elements make up substantial proportions of eukaryotic genomes and many are thought to be remnants of ancient viral infections. Current research has begun to highlight the role transposable elements can play in the immune system response to infections. However, most of our knowledge about transposable element expression during infection is limited by the specific host and pathogen factors from each study, making it difficult to compare studies and develop broader patterns regarding the role of transposable elements during infection. Here, we use the tools and resources available in the model, Drosophila melanogaster, to analyze multiple gene expression datasets of flies subject to bacterial, fungal, and viral infections. We analyzed differences in pathogen species, host genotype, host tissue, and sex to understand how these factors impact transposable element expression during infection. Our results highlight both shared and unique transposable element expression patterns between pathogens and suggest a larger effect of pathogen factors over host factors for influencing transposable element expression.

Indexed as

DNA Transposable ElementsDrosophila melanogasterAnimalsFemaleGene Expression ProfilingGene Expression RegulationHost-Pathogen InteractionsMaleDNA Transposable ElementsbacteriaDrosophila melanogasterfungiinfectiontransposable elementsvirusWolbachia

Identifiers

PMID39129654
PMCPMC11373657

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.