Evidence map›Paper›PMID 39127986›Full record

ArticleDiscover oncology2024

The role of the ALKBH5 RNA demethylase in invasive breast cancer.

Corinne L Woodcock, Mansour Alsaleem, Michael S Toss, Jennifer Lothion-Roy, Anna E Harris, Jennie N Jeyapalan, Nataliya Blatt, Albert A Rizvanov, Regina R Miftakhova, Yousif A Kariri and 6 more

Abstract read
In one paragraph

Article in Discover oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Corinne L WoodcockUniversity of Nottingham Biodiscovery Institute, University of Nottingham, Nottingham, UK. corinne.woodcock1@nottingham.ac.uk.ORCID http://orcid.org/0000-0001-6369-0182
Mansour AlsaleemNottingham Breast Cancer Research Centre, School of Medicine, Academic Unit for Translational Medical Sciences, University of Nottingham, Nottingham, UK.ORCID http://orcid.org/0000-0002-7689-2493
Michael S TossNottingham Breast Cancer Research Centre, School of Medicine, Academic Unit for Translational Medical Sciences, University of Nottingham, Nottingham, UK.ORCID http://orcid.org/0000-0002-9077-3984
Jennifer Lothion-RoyUniversity of Nottingham Biodiscovery Institute, University of Nottingham, Nottingham, UK.ORCID http://orcid.org/0000-0002-8602-7006
Anna E HarrisUniversity of Nottingham Biodiscovery Institute, University of Nottingham, Nottingham, UK.ORCID http://orcid.org/0000-0003-4153-1652
Jennie N JeyapalanUniversity of Nottingham Biodiscovery Institute, University of Nottingham, Nottingham, UK.ORCID http://orcid.org/0000-0002-6133-224X
Nataliya BlattUniversity of Nottingham Biodiscovery Institute, University of Nottingham, Nottingham, UK.ORCID http://orcid.org/0000-0003-2345-979X
Albert A RizvanovInstitute for Fundamental Medicine and Science, Kazan Federal University, Kazan, Tatarstan, Russia.ORCID http://orcid.org/0000-0002-9427-5739
Regina R MiftakhovaInstitute for Fundamental Medicine and Science, Kazan Federal University, Kazan, Tatarstan, Russia.ORCID http://orcid.org/0000-0002-6686-1968
Yousif A KaririNottingham Breast Cancer Research Centre, School of Medicine, Academic Unit for Translational Medical Sciences, University of Nottingham, Nottingham, UK.ORCID http://orcid.org/0000-0002-2507-2292
Srinivasan MadhusudanUniversity of Nottingham Biodiscovery Institute, University of Nottingham, Nottingham, UK.ORCID http://orcid.org/0000-0002-5354-5480
Andrew R GreenNottingham Breast Cancer Research Centre, School of Medicine, Academic Unit for Translational Medical Sciences, University of Nottingham, Nottingham, UK.ORCID http://orcid.org/0000-0002-0488-5913
Catrin S RutlandFaculty of Medicine and Health Science, School of Veterinary Medicine and Science, University of Nottingham, Nottingham, UK.ORCID http://orcid.org/0000-0002-2009-4898
Rupert G FraySchool of Biosciences, Plant Science Division, University of Nottingham, Nottingham, UK.ORCID http://orcid.org/0000-0002-3935-8945
Emad A RakhaUniversity of Nottingham Biodiscovery Institute, University of Nottingham, Nottingham, UK.ORCID http://orcid.org/0000-0002-5009-5525
Nigel P MonganUniversity of Nottingham Biodiscovery Institute, University of Nottingham, Nottingham, UK. nigel.mongan@nottingham.ac.uk.ORCID http://orcid.org/0000-0001-5438-1126

Funding

BBSRC Doctoral Training Program (BB/I024291/1)British Council ResearcherLinks program RLWK10-458041157
6 · The paper itself

Abstract

backgroundN6-methyladenosine (m

methodsPublicly available data were used to investigate ALKBH5 mRNA alterations, prognostic significance, and association with clinical parameters at the genomic and transcriptomic level. Differentially expressed genes (DEGs) and enriched pathways with low or high ALKBH5 expression were investigated. Immunohistochemistry (IHC) was used to assess ALKBH5 protein expression in a large well-characterised BC series (n = 1327) to determine the clinical significance and association of ALKBH5 expression.

resultsReduced ALKBH5 mRNA expression was significantly associated with poor prognosis and unfavourable clinical parameters. ALKBH5 gene harboured few mutations and/or copy number alternations, but low ALKBH5 mRNA expression was seen. Patients with low ALKBH5 mRNA expression had a number of differentially expressed genes and enriched pathways, including the cytokine-cytokine receptor interaction pathway. Low ALKBH5 protein expression was significantly associated with unfavourable clinical parameters associated with tumour progression including larger tumour size and worse Nottingham Prognostic Index group.

conclusionThis study implicates ALKBH5 in BC and highlights the need for further functional studies to decipher the role of ALKBH5 and RNA m

Indexed as

Breast cancerEpitranscriptomicsm6AN6-methyladenosinePrognosis

Identifiers

PMID39127986
PMCPMC11317455

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.