Evidence map›Paper›PMID 39126294›Full record

ArticleNeuro-oncology2024

Immune landscape of isocitrate dehydrogenase-stratified primary and recurrent human gliomas.

Pravesh Gupta, Minghao Dang, Shivangi Oberai, Simona Migliozzi, Rakesh Trivedi, Gayatri Kumar, Mekenzie Peshoff, Nancy Milam, Aml Ahmed, Krishna Bojja and 20 more

Erratum issuedAbstract read
In one paragraph

Article in Neuro-oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  5. Inflammasomes in glioblastoma.Journal of neuroinflammation · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors.

Pravesh GuptaDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID 0000-0002-1643-8950
Minghao DangDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Shivangi OberaiDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Simona MigliozziDepartment of Neurological Surgery, Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, Miami, Florida, USA.
Rakesh TrivediDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID 0000-0003-4835-1814
Gayatri KumarDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID 0000-0003-3686-5471
Mekenzie PeshoffDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Nancy MilamDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Aml AhmedDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Krishna BojjaDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Tuan M TranDepartment of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Joy GuminDepartment of Neurosurgery, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Carlos Kamiya-MatsuokaDepartment of Neuro-Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Jason HuseDepartment of Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID 0000-0003-4514-0640
Kathryn CoxDepartment of Hematopoietic Biology and Malignancy, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Jianzhuo LiDepartment of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Huma ShehwanaNetherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-3665-8846
Sameer A ShethDepartment of Neurosurgery, Baylor College of Medicine, Houston, Texas, USA.
Rodriguez SaxonDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Sun BaohuaDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Brittany Parker KerriganDepartment of Neurosurgery, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Atul MaheshwariDepartment of Neurology and Neuroscience, Baylor College of Medicine, Houston, Texas, USA.
Edwin Roger Parra CuentasDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Nicholas E NavinDepartment of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Amy B HeimbergerDepartment of Neurosurgery, Northwestern University, Evanston, Illinois, USA.
Frederick F LangDepartment of Neurosurgery, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID 0000-0003-3747-873X
Antonio IavaroneDepartment of Neurological Surgery, Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, Miami, Florida, USA.ORCID 0000-0002-0683-4634
Karen Clise-DwyerDepartment of Hematopoietic Biology and Malignancy, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Linghua WangDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID 0000-0001-9380-0266
Krishna P BhatDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.ORCID 0000-0002-2020-8509

Funding

Understanding the role of triggering receptor expressed on myeloid cells 2 (TREM2) on microglia and macrophages in gliomasF31NS141605 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Mekenzie Peshoff · 2025 to 2026
$76k
CPRIT Single Core RP180684Marnie Rose FoundationNINDS NIH HHS F31 NS141605The University of Texas (UT) MD Anderson Cancer Center (MDACC)UT MDACC start-up research fund
6 · The paper itself

Abstract

backgroundHuman gliomas are classified using isocitrate dehydrogenase (IDH) status as a prognosticator; however, the influence of genetic differences and treatment effects on ensuing immunity remains unclear.

methodsIn this study, we used sequential single-cell transcriptomics on 144 678 and spectral cytometry on over 2 million immune cells encompassing 48 human gliomas to decipher their immune landscape.

resultsWe identified 22 distinct immune cell types that contribute to glioma immunity. Specifically, brain-resident microglia (MG) were reduced with a concomitant increase in CD8+ T lymphocytes during glioma recurrence independent of IDH status. In contrast, IDH-wild type-associated patterns, such as an abundance of antigen-presenting cell-like MG and cytotoxic CD8+ T cells, were observed. Beyond elucidating the differences in IDH, relapse, and treatment-associated immunity, we discovered novel inflammatory MG subpopulations expressing granulysin, a cytotoxic peptide that is otherwise expressed in lymphocytes only. Furthermore, we provide a robust genomic framework for defining macrophage polarization beyond M1/M2 paradigm and reference signatures of glioma-specific tumor immune microenvironment (termed GlioTIME-36) for deconvoluting transcriptomic datasets.

conclusionsThis study provides advanced optics of the human pan-glioma immune contexture as a valuable guide for translational and clinical applications.

Indexed as

Brain NeoplasmsGliomaIsocitrate DehydrogenaseNeoplasm Recurrence, LocalTumor MicroenvironmentBiomarkers, TumorCD8-Positive T-LymphocytesHumansLymphocytes, Tumor-InfiltratingMicrogliaMutationPrognosisSingle-Cell AnalysisTranscriptomeBiomarkers, TumorIsocitrate Dehydrogenasegliomaisocitrate dehydrogenasemicrogliatumor immune microenvironment

Identifiers

PMID39126294
PMCPMC11630528

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.